PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021780.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 177aa    MW: 19014 Da    PI: 4.405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021780.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-095352655
          AP2 26 g.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 + k+ r++lg++ tae+Aa+a++ a+++++g
  Pbr021780.1  5 NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 35
                 4367************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.305143IPR001471AP2/ERF domain
SMARTSM003801.4E-11149IPR001471AP2/ERF domain
CDDcd000181.07E-19145No hitNo description
Gene3DG3DSA:3.30.730.103.8E-19245IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-13245IPR016177DNA-binding domain
PfamPF008473.2E-6635IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MREPNKKKSR IWLGTYPTAE MAARAHDVAA LAFRGRLACL NFADSAWRLP VPASTDSVDI  60
RRAAAEAAET FRPAEFGGVS ESGDDEKKSK KMEGEKDCGG AEQSDCGGAE QSDCGGAEQS  120
GSSFYLDEEE MFAMPRLLDS MAEGLLLSPP RRSAGGSMNW DDMGSNDDVN LWSFSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021780.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5435030.0KC543503.1 Malus x domestica CBF/DREB 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377921.11e-126PREDICTED: dehydration-responsive element-binding protein 1D-like
TrEMBLA0A0R4XC291e-113A0A0R4XC29_9ROSA; CBF4
TrEMBLA0A1Y0DCU71e-113A0A1Y0DCU7_MALDO; C-repeat binding factor-like 3
TrEMBLA0A498K0A21e-113A0A498K0A2_MALDO; Uncharacterized protein
TrEMBLR4KY741e-113R4KY74_MALDO; CBF/DREB 4
STRINGXP_009377921.11e-126(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-38C-repeat/DRE binding factor 1