PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021770.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 381aa    MW: 39685.1 Da    PI: 5.9158
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021770.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.1e-36911972105
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaak 92 
                  ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++        + +ss s++     ++++
  Pbr021770.1  91 PTRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkIPTTSSMSVED----NSSP 184
                  6899************************************************************88888444333333322222222221....2222 PP

          TCP  93 saakskksqksaa 105
                  ++a++k+++ s++
  Pbr021770.1 185 TSATKKRKRPSNS 197
                  2222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.0E-3096195IPR005333Transcription factor, TCP
PROSITE profilePS5136926.00397151IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTSYLEDQDD DGGASDLSTS TGDPGDNDHT NGDGVVSTQP NYEETTELHS LKEEPIDSDP  60
QQPPQGHPIG MLPDTMQMPM PMSVQLPVSA PTRRSSTKDR HTKVEGRGRR IRIPATCAAR  120
IFQLTRELGH KSDGETVRWL LEHAEQAIIE ATGTGTVPAI AVSVGGTLKI PTTSSMSVED  180
NSSPTSATKK RKRPSNSEFM DVRKDAVSQS SGLAPVSPTA PQGLVPVWAV GGAGLIVPAN  240
AFWMGPVGSG AAPSGPQPQI WALSPTMTPV FNMVGAARPI SSFVVNSGGG AGGVEVRAPS  300
PALSNSAAST STVGARAAKR SSTTMAPPSV SSSSNNSNGS GSGATTKTQM LRDFSLEIYD  360
KQELKFMDQP VGPAHQQQTQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377907.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646476e-67TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A498K0T30.0A0A498K0T3_MALDO; Uncharacterized protein
STRINGXP_009377907.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.18e-63TCP family protein