PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr021767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TALE | ||||||||
Protein Properties | Length: 144aa MW: 16906.1 Da PI: 9.6029 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 9.8e-08 | 92 | 125 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Pbr021767.1 92 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 125 469*****************************87 PP | |||||||
2 | ELK | 26.9 | 1.1e-09 | 46 | 67 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Pbr021767.1 46 ELKIELKQGFKSRIEDVREEIL 67 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.132 | 46 | 66 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 66 | 129 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 68 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-10 | 68 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-10 | 69 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 73 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-18 | 86 | 125 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSDDEDDMPM DFTMDQSGGE GHDMMGFGPL LPTESERSLM ERVRQELKIE LKQGFKSRIE 60 DVREEILRKR RAGKLPGDTT TVLKNWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI 120 NQRKRNWHSN SQSVTSLKSK RKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 6e-14 | 69 | 125 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 142 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr021767.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ038132 | 1e-165 | JQ038132.1 Prunus persica cultivar Chiripa KNOPE7 (KNOPE7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009377898.1 | 1e-103 | PREDICTED: homeobox protein HD1-like | ||||
Refseq | XP_009377901.1 | 1e-103 | PREDICTED: homeobox protein HD1-like | ||||
Swissprot | Q9FPQ8 | 9e-92 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | D9ZJ07 | 1e-100 | D9ZJ07_MALDO; HD domain class transcription factor | ||||
STRING | XP_009377898.1 | 1e-102 | (Pyrus x bretschneideri) | ||||
STRING | XP_009377901.1 | 1e-102 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 4e-94 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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