PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021160.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 455aa    MW: 49905.1 Da    PI: 6.4417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021160.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-063443821154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pbr021160.1 344 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 382
                  5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.135333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-12343399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9343401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-7343386No hitNo description
SMARTSM003530.0032344388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MADEFQTPGN WWDSSSRTRF ETGASPPSSS LNSLGSFGWQ PDMVDIKARS SMDSGSVSGT  60
SSMVFHDTHK LQEGSDSASG GDPNLHMMGL GLSSQATDWN QALFRGEKAE TSFRSILQEN  120
MNSSTANFQQ ESDQQLQWRE KLFAGGCGDS SNEFKQMNRG FSLDQTQFSP QYSSGESTVT  180
CQGLPSSFQM DSASAALYGS PSTILQGILG PHHDNQPQQP NSATINFPYQ GNYGINNSSE  240
LLPSWSKVPQ FLRTSPPKQP PHSHLQFSNN APFWNAPHEA AMKDVRPSFF PSLQPQFPAA  300
RFDEKPKNIS EVQESGAVGK KSGSEVVSKR PRNETSSALP AFKVRKEKMG DRITALQQLV  360
SPFGKTDTAS VLSEAIEYIK FLHEQVNILS TPYMKSGTAI QHQQQMSDKS KDPDGPKQDL  420
RSRGLCLVPV SSTFPVTHET TVDFWTPTFG GTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021160.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180542e-35AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085802e-35BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377291.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT35e-91BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A498K8C90.0A0A498K8C9_MALDO; Uncharacterized protein
STRINGXP_009377291.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]