PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021137.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 554aa MW: 60395.4 Da PI: 9.6333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021137.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pbr021137.1 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	12.6	0.00042	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Pbr021137.1 170 WKCEKCSKKYAVQSDWKAHSKTC 192 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.99E-7	93	116	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	93	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	94	116	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	94	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-4	158	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.99E-7	165	190	No hit	No description
SMART	SM00355	140	170	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MQMMSGDGFS INMSSAIDGF AQDHQLNDNP SGGLKPNPPN AVAKKKRNLP GTPGKQYESW 60 WVCSQFIVSY FVSTDPDAEV IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRLNKEV KKKVYICPEK TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA 180 VQSDWKAHSK TCGTREYKCD CGTLFSRKDS FITHRAFCDA LTEESARLTT SSVIGVHSNL 240 NFGNDAMLNN PMMNNSQAVV QDVSQISMQY GQGLMRQDFN GLDQLHQHEK PRLSLWLNQQ 300 ATSNSNQVNL MDDMQANPNH PLYVTSSSSN AFPEMVQMPS SSNNVNLFGS SNSMTTFRAS 360 TSGANLSLSP GQESGTSKLI GKNGNLVGSG TSKPPAAPMS ATALLQKAAQ LGSTRSSNNQ 420 GSSLGVNVMS SSSSSNTLRG FSNLNQNRSN ELHQVVQNAH QSGGGSANLS SLTSSSSNTS 480 ATTLEQLMNT IQRGPSNIGS IDHQNSLTRD FLGMGGAGGG EHIDQLSHTN RQIFFPQDLA 540 KFASSMSQFT RNH*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MQMMSGDGFS INMSSAIDGF AQDHQLNDNP SGGLKPNPPN AVAKKKRNLP GTPGKQYESW  60
WVCSQFIVSY FVSTDPDAEV IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRLNKEV KKKVYICPEK TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA  180
VQSDWKAHSK TCGTREYKCD CGTLFSRKDS FITHRAFCDA LTEESARLTT SSVIGVHSNL  240
NFGNDAMLNN PMMNNSQAVV QDVSQISMQY GQGLMRQDFN GLDQLHQHEK PRLSLWLNQQ  300
ATSNSNQVNL MDDMQANPNH PLYVTSSSSN AFPEMVQMPS SSNNVNLFGS SNSMTTFRAS  360
TSGANLSLSP GQESGTSKLI GKNGNLVGSG TSKPPAAPMS ATALLQKAAQ LGSTRSSNNQ  420
GSSLGVNVMS SSSSSNTLRG FSNLNQNRSN ELHQVVQNAH QSGGGSANLS SLTSSSSNTS  480
ATTLEQLMNT IQRGPSNIGS IDHQNSLTRD FLGMGGAGGG EHIDQLSHTN RQIFFPQDLA  540
KFASSMSQFT RNH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-37	166	232	3	69	Zinc finger protein JACKDAW
5b3h_F	3e-37	166	232	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021137.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008369754.2	0.0	zinc finger protein JACKDAW-like
Swissprot	Q9LVQ7	1e-114	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A498K1H4	0.0	A0A498K1H4_MALDO; Uncharacterized protein
STRING	XP_009342741.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009349713.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-100	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]