PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020929.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 370aa MW: 42010.8 Da PI: 4.8441

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020929.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.3e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL++kveg ++el evi+ +d+yk++Pw+Lp k + ++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ + Pbr020929.1 6 LPPGFRFHPTDEELVGYYLHRKVEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC-Q 101 79**************************.99**********95334455788**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g +ktLvfy+grap g +tdW+mheyrl Pbr020929.1 102 SDVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-60	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.874	6	156	IPR003441	NAC domain
Pfam	PF02365	5.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGGASLPPGF RFHPTDEELV GYYLHRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSDVTGYRKT LVFYRGRAPL 120 GDRTDWIMHE YRLTDDLALG PSGHQGVFAL CRVVKKNEHA QKTHDSHEGP KAKGFGSALS 180 NKEDMTSRRI STDPLSISAD ILHSNCLNNE SHYSSRAASP YEVNPMAEFE PALGETNYAD 240 FWVSPDLILD SSKDYPQLQE AMPDYFQQYE FPSTMTLLQS YEPRESPSSS YSNFTGDLEM 300 VDDVHQIGGM SPFSGHTDYV GYYGNEEMQF EGSETRDRQA LICRQVSADG SLGELGGLWL 360 QEDNMVIVM*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGGASLPPGF RFHPTDEELV GYYLHRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSDVTGYRKT LVFYRGRAPL  120
GDRTDWIMHE YRLTDDLALG PSGHQGVFAL CRVVKKNEHA QKTHDSHEGP KAKGFGSALS  180
NKEDMTSRRI STDPLSISAD ILHSNCLNNE SHYSSRAASP YEVNPMAEFE PALGETNYAD  240
FWVSPDLILD SSKDYPQLQE AMPDYFQQYE FPSTMTLLQS YEPRESPSSS YSNFTGDLEM  300
VDDVHQIGGM SPFSGHTDYV GYYGNEEMQF EGSETRDRQA LICRQVSADG SLGELGGLWL  360
QEDNMVIVM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	5	162	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	5	162	19	174	NAC domain-containing protein 19
3swm_B	2e-55	5	162	19	174	NAC domain-containing protein 19
3swm_C	2e-55	5	162	19	174	NAC domain-containing protein 19
3swm_D	2e-55	5	162	19	174	NAC domain-containing protein 19
3swp_A	2e-55	5	162	19	174	NAC domain-containing protein 19
3swp_B	2e-55	5	162	19	174	NAC domain-containing protein 19
3swp_C	2e-55	5	162	19	174	NAC domain-containing protein 19
3swp_D	2e-55	5	162	19	174	NAC domain-containing protein 19
4dul_A	2e-55	5	162	16	171	NAC domain-containing protein 19
4dul_B	2e-55	5	162	16	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020929.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009377065.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	O49697	1e-102	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A498HHP1	0.0	A0A498HHP1_MALDO; Uncharacterized protein
STRING	XP_009377065.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6722	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-104	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]