PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020828.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 369aa    MW: 39790 Da    PI: 8.3599
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020828.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.23.6e-3882142262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++
  Pbr020828.1  82 PETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKTK 142
                  67899*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3366135IPR003851Zinc finger, Dof-type
PfamPF027015.3E-3285140IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.15286140IPR003851Zinc finger, Dof-type
PROSITE patternPS01361088124IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVFSSIPVYV DPPNWHQQPN HHPLGGTTAG SENPHEFPPL PPPPSLTHVC GAGSISGVGG  60
CPGSIRPSSM SDRARLAKIP QPETALKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW  120
TRGGALRSVP VGGGCRRNKK TKSNSSSSSR SKSPVATGDH IQTCSNSITN NSSNHMIGNT  180
PHHLTQLPPS THQSLPFLAS SIPSLGRYGV AGNMGLNFNE IQQEQTDHHH HHMGFQFHQI  240
AGGNNMNNLS GGILGGDHNN QWRNSNLQQI PFLVGTGFES STSTGLYPFQ TGDQGVDHQA  300
TTDPMVGNNS RVNTEQLPPP VKTEDNHGLT FTSIPISAET NNSQFWGGNL NAWTDLSGLN  360
SSSTSHLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353691.10.0PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLD9ZIY00.0D9ZIY0_MALDO; DOF domain class transcription factor
STRINGXP_009353691.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.28e-44OBF-binding protein 3