PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 369aa MW: 39790 Da PI: 8.3599 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.2 | 3.6e-38 | 82 | 142 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++ Pbr020828.1 82 PETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKTK 142 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-33 | 66 | 135 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.3E-32 | 85 | 140 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.152 | 86 | 140 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 88 | 124 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MVFSSIPVYV DPPNWHQQPN HHPLGGTTAG SENPHEFPPL PPPPSLTHVC GAGSISGVGG 60 CPGSIRPSSM SDRARLAKIP QPETALKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW 120 TRGGALRSVP VGGGCRRNKK TKSNSSSSSR SKSPVATGDH IQTCSNSITN NSSNHMIGNT 180 PHHLTQLPPS THQSLPFLAS SIPSLGRYGV AGNMGLNFNE IQQEQTDHHH HHMGFQFHQI 240 AGGNNMNNLS GGILGGDHNN QWRNSNLQQI PFLVGTGFES STSTGLYPFQ TGDQGVDHQA 300 TTDPMVGNNS RVNTEQLPPP VKTEDNHGLT FTSIPISAET NNSQFWGGNL NAWTDLSGLN 360 SSSTSHLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020828.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009353691.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
TrEMBL | D9ZIY0 | 0.0 | D9ZIY0_MALDO; DOF domain class transcription factor | ||||
STRING | XP_009353691.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.2 | 8e-44 | OBF-binding protein 3 |