PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33917.1 Da PI: 7.4566 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.3 | 1.2e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++Pw+Lp + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + + Pbr020642.1 8 LPPGFRFHPTDEELVKHYLCRKCASQPISV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGH--PK 102 79****************************.88***************6555679*************************************99..78 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ap+gekt+W+mheyrl Pbr020642.1 103 PVGIKKALVFYAGKAPRGEKTNWIMHEYRL 132 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-63 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.953 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-28 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MSSADLQLPP GFRFHPTDEE LVKHYLCRKC ASQPISVPII AEIDLYKYDP WELPGLALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPIGH PKPVGIKKAL VFYAGKAPRG 120 EKTNWIMHEY RLADVDRSPR KKNSLRLDDW VLCRIYNKKG TVENQQPQQQ QEQQRTASRN 180 ASSGSEFEDR KPDNLRCPPP PASVVPSRHV SDYVYFDNSD SVPKLHTDSS CSEQVVSPEL 240 ACEVQSEPKW KEWEKALEIP YSYMDTTVEN GFGAQFQSGN EMSPLQDIFM YLQKPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-81 | 2 | 163 | 9 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020642.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376875.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-148 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | D9ZJ92 | 0.0 | D9ZJ92_MALDO; NAC domain class transcription factor | ||||
STRING | XP_009376875.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-149 | NAC family protein |