PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020438.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 1159aa MW: 128237 Da PI: 9.7788

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020438.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	45	81	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W+ E ++++da +++G++ W+++a+ + +R+ +++ Pbr020438.1 45 QWSNGELQRFYDAYRKYGKD-WRKVAAAVR-NRSIEMVE 81 7***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.03E-8	45	89	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-6	45	85	IPR001005	SANT/Myb domain
CDD	cd00167	8.08E-4	46	80	No hit	No description
Pfam	PF06584	2.8E-33	644	744	IPR033471	DIRP domain
SMART	SM01135	3.4E-59	644	745	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence Send to blast
MAPTRKAKGV KRYTTVNEAS PEKYGGGSNK KKQRKRKLSD KLGLQWSNGE LQRFYDAYRK 60 YGKDWRKVAA AVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLKAMMTDH YNVMEGSDSE 120 RESNDDLGFS RKPQKRKLGK DQPSVSKDVL HTHPSASLEG CLSLLKRRKL DGDQPRAVGK 180 RTPRVPISYP HKKDDREAYV SPIKKGRKSE GDNDDDIAHV AALLTEASQR GGSPQVSQTP 240 YGRPVHIKSS SVQSSGRMHP PPGKARANLR RASVDEDWLE GSLGSGGAET GDDAGDLLEG 300 VGTVEMPSKG NKLYKKRGKV KHSGNHQFDD GGEACSGTEG LNASSRAIDD SEVSNTKGER 360 PSPQGQRKES KKLYFGDESS CLDALQTLAD LSLMMPESME SGSSVQLKDE GANVDAEDKF 420 SVPEATSTSQ FRNKNKIPSV KHRVPYTISG VEGSNSKKSK LGRDPAVDMN TVYESEQQLL 480 STTKILKRKR KSSIPKISNA DAHMDSDMNE PSKTEGCGEE ENKPVTKGKR TNQISTPSKQ 540 WKSARSLEGS LNSDQRRTVT DLTGSTAQAS TSSQVNLPTK QTSRRKMYIP RTLHPKEKSC 600 EKKLKNQLIT RSNSVQDRAL HLKEKISCCL SSHLVRRWCT FEWFYSALDY PWFAKREFEE 660 YLNHVGLGHI PRLTRVEWGV IRSSLGKPRR FSEHFLHEER EKLKQYRESV RKHYAELRTG 720 VREGLPTDLA RPLSVGQRVI ALHPKTREVH DGSVLTVDHD KCRVQFDRPD IGVEFVMDVD 780 CMPLNPLDNM PEALRRQNIA FDKSFLTSKE ANNNGNLNFG GPMMFPSSGH LVKATSPVNA 840 SIKQGKGDAI HTTAQPKTAS ADIGRAQQTA YSQPGMVVAH NQAREADIRA LSELNRALDK 900 KEALLVELRN TNNNILENQN SGECSLKDSE PFKKHYATVS SALVNLRQRN TYPANSLPPW 960 MKQPANSTIS GGPSSFDSSI SQESGSSVAD IVEVSKSKAH MMVNAAIQAM ASRKCGEDAY 1020 VRIREALDSI DNQHFTSDSR LPVNRSQEQV NGSLGHRNQI SSGTSDPNMT SDSSAPKLHD 1080 ADKNEAQILS ELISACVMAV HMIQTCTERQ FPPAVVAQVL DYAVTSLHPR CPQNVGVYRE 1140 IQMCMGRIKT QILALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence Send to blast

MAPTRKAKGV KRYTTVNEAS PEKYGGGSNK KKQRKRKLSD KLGLQWSNGE LQRFYDAYRK  60
YGKDWRKVAA AVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLKAMMTDH YNVMEGSDSE  120
RESNDDLGFS RKPQKRKLGK DQPSVSKDVL HTHPSASLEG CLSLLKRRKL DGDQPRAVGK  180
RTPRVPISYP HKKDDREAYV SPIKKGRKSE GDNDDDIAHV AALLTEASQR GGSPQVSQTP  240
YGRPVHIKSS SVQSSGRMHP PPGKARANLR RASVDEDWLE GSLGSGGAET GDDAGDLLEG  300
VGTVEMPSKG NKLYKKRGKV KHSGNHQFDD GGEACSGTEG LNASSRAIDD SEVSNTKGER  360
PSPQGQRKES KKLYFGDESS CLDALQTLAD LSLMMPESME SGSSVQLKDE GANVDAEDKF  420
SVPEATSTSQ FRNKNKIPSV KHRVPYTISG VEGSNSKKSK LGRDPAVDMN TVYESEQQLL  480
STTKILKRKR KSSIPKISNA DAHMDSDMNE PSKTEGCGEE ENKPVTKGKR TNQISTPSKQ  540
WKSARSLEGS LNSDQRRTVT DLTGSTAQAS TSSQVNLPTK QTSRRKMYIP RTLHPKEKSC  600
EKKLKNQLIT RSNSVQDRAL HLKEKISCCL SSHLVRRWCT FEWFYSALDY PWFAKREFEE  660
YLNHVGLGHI PRLTRVEWGV IRSSLGKPRR FSEHFLHEER EKLKQYRESV RKHYAELRTG  720
VREGLPTDLA RPLSVGQRVI ALHPKTREVH DGSVLTVDHD KCRVQFDRPD IGVEFVMDVD  780
CMPLNPLDNM PEALRRQNIA FDKSFLTSKE ANNNGNLNFG GPMMFPSSGH LVKATSPVNA  840
SIKQGKGDAI HTTAQPKTAS ADIGRAQQTA YSQPGMVVAH NQAREADIRA LSELNRALDK  900
KEALLVELRN TNNNILENQN SGECSLKDSE PFKKHYATVS SALVNLRQRN TYPANSLPPW  960
MKQPANSTIS GGPSSFDSSI SQESGSSVAD IVEVSKSKAH MMVNAAIQAM ASRKCGEDAY  1020
VRIREALDSI DNQHFTSDSR LPVNRSQEQV NGSLGHRNQI SSGTSDPNMT SDSSAPKLHD  1080
ADKNEAQILS ELISACVMAV HMIQTCTERQ FPPAVVAQVL DYAVTSLHPR CPQNVGVYRE  1140
IQMCMGRIKT QILALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	137	RKPQKRKL
2	583	604	RRKMYIPRTLHPKEKSCEKKLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020438.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434219	4e-79	AM434219.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X191377.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376688.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X3
Refseq	XP_018507428.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X3
TrEMBL	A0A498K8X0	0.0	A0A498K8X0_MALDO; Uncharacterized protein
STRING	XP_009376654.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009376687.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding