PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020294.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 264aa    MW: 29466.8 Da    PI: 5.2088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020294.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09155202455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L++++P +    sk +  a +L + ++Y++sLq
  Pbr020294.1 155 SHSLAERVRRGKINERLTCLQDIVPGC----SKTMGMAVMLDEIINYVQSLQ 202
                  8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-9149206No hitNo description
SuperFamilySSF474591.57E-16149217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15153213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSEFTEDFLS NKPSLPFLDI DQNMEPTNQY ADQFNIPSVV EYPSLNFHTY MPFSNDTYLF  60
SNQEPEFPAG NMIENFPKLQ VHSIVTDGNE SKKRIAVDDA TESSSGISTP PVSETGVKRK  120
NSAERGKRVK SNEKEDEKPK EFVHVRARRG QATHSHSLAE RVRRGKINER LTCLQDIVPG  180
CSKTMGMAVM LDEIINYVQS LQNQIEFLSM KLATASSFYD SNSQTDVTET MQIAGELERL  240
KREAAGYGGF GASFHSTSSA WSP*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020294.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347236.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK78e-56BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A498I1111e-166A0A498I111_MALDO; Uncharacterized protein
STRINGXP_009347236.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.13e-58BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]