PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020288.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 371aa MW: 41533.1 Da PI: 7.1777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020288.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.5	7.4e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL++kv++ +++ +++++vd++k+ePwdLp k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke+++ +g Pbr020288.1 5 LPPGFRFHPTDEELITHYLCPKVSDVSFTS-KAVADVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIHR-TGV 100 79***********************999.88***********988999************************************9.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrap+gek++Wvmheyrle Pbr020288.1 101 LVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 *****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.981	5	151	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MQESLPPGFR FHPTDEELIT HYLCPKVSDV SFTSKAVADV DLNKCEPWDL PGKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIHRTGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL ENKHPFNSSK EEWVVCRVFQ KSISALKKPQ QATTSSHQQP STESPCDDTN 180 SIVNEFGDIE LPNLNSNINA NSSSGFSNNI SSPPSYYSNI IDHSKNNIND VTNMSLNMNW 240 AATAAREAAT NAVSWPSSLL SPSNLSVNSL LLRALHLRSS TNNNCSNYQP RDTNHGQATA 300 GTSTLDYSSY NNMQQQGMMP SMSHHIGSST TMDHINSNFQ ASSSSIKDQM MESMPPQQHS 360 EQPFNLDSIW *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MQESLPPGFR FHPTDEELIT HYLCPKVSDV SFTSKAVADV DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIHRTGV LVGMKKTLVF YKGRAPRGEK  120
SNWVMHEYRL ENKHPFNSSK EEWVVCRVFQ KSISALKKPQ QATTSSHQQP STESPCDDTN  180
SIVNEFGDIE LPNLNSNINA NSSSGFSNNI SSPPSYYSNI IDHSKNNIND VTNMSLNMNW  240
AATAAREAAT NAVSWPSSLL SPSNLSVNSL LLRALHLRSS TNNNCSNYQP RDTNHGQATA  300
GTSTLDYSSY NNMQQQGMMP SMSHHIGSST TMDHINSNFQ ASSSSIKDQM MESMPPQQHS  360
EQPFNLDSIW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-59	2	157	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-59	2	157	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-59	2	157	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-59	2	157	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-59	2	157	17	174	NAC domain-containing protein 19
3swm_B	1e-59	2	157	17	174	NAC domain-containing protein 19
3swm_C	1e-59	2	157	17	174	NAC domain-containing protein 19
3swm_D	1e-59	2	157	17	174	NAC domain-containing protein 19
3swp_A	1e-59	2	157	17	174	NAC domain-containing protein 19
3swp_B	1e-59	2	157	17	174	NAC domain-containing protein 19
3swp_C	1e-59	2	157	17	174	NAC domain-containing protein 19
3swp_D	1e-59	2	157	17	174	NAC domain-containing protein 19
4dul_A	1e-59	2	157	14	171	NAC domain-containing protein 19
4dul_B	1e-59	2	157	14	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020288.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347167.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A498JRP7	0.0	A0A498JRP7_MALDO; Uncharacterized protein
STRING	XP_009347167.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-107	NAC domain containing protein 58