PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 463aa MW: 52896.6 Da PI: 7.5019 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 137 | 1.6e-42 | 168 | 329 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa..sec...eaesss 79 + k+drhski T++g+RdRR+Rls+e+a +fF Lqd LGfdk+skt+eWLl q++paik+l ++ ++s+a ++c + + Pbr020246.1 168 TCKRDRHSKINTARGPRDRRMRLSLEVALKFFGLQDALGFDKPSKTVEWLLIQSEPAIKKLSRDhhrqfnykhmvrcakTTSPAtsESCevlS---GV 262 689******************************************************************999999999833333333443331...22 PP TCP 80 ssasnsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +a + k ++++ k ++q+++++++ lak sr++arararertrekm+ ++k Pbr020246.1 263 DEAP-T--NvnissngkvrsrgiKPSAKERKIVHRQSRKSAFHPLAKASRENARARARERTREKMQRSKK 329 2222.1..0112344567777875555555777777777789***********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-43 | 169 | 326 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.723 | 170 | 228 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.314 | 306 | 323 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MFPSHNNNLN ELVPVSYPHV DQSIFHSWPF HHDNSTLTPN SLTILNPNPN SRQQEGGEEN 60 LHQQHQHLPF SLLYFPSPFE DDDVLLFDQQ HHHQEPDHIE LSLHESQEPP YFMKEAAAAA 120 ADDNTVVGND HQKTTTTSVN RKMVDWDSNK KGHRMNMDDQ PQIPRRRTCK RDRHSKINTA 180 RGPRDRRMRL SLEVALKFFG LQDALGFDKP SKTVEWLLIQ SEPAIKKLSR DHHRQFNYKH 240 MVRCAKTTSP ATSESCEVLS GVDEAPTNVN ISSNGKVRSR GIKPSAKERK IVHRQSRKSA 300 FHPLAKASRE NARARARERT REKMQRSKKP SNDQANSSRL SSWNPFETEE ESPIHNNNMT 360 STTNDQPNSR AVLRDYPDEV EEPLSSSQAG DIQDMVVDHG TTHDAMVVLG KWSPPPVFTR 420 LQQNTGISQE HQQFADFQFF GKPWEVDNNT HNQSILSGNF LS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020246.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501065 | 0.0 | KM501065.1 Malus domestica TCP domain-containing protein 18 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346767.1 | 0.0 | PREDICTED: transcription factor TCP12 | ||||
Refseq | XP_009346776.1 | 0.0 | PREDICTED: transcription factor TCP12 | ||||
TrEMBL | A0A498JRK6 | 0.0 | A0A498JRK6_MALDO; Uncharacterized protein | ||||
STRING | XP_009346767.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 4e-24 | TCP family protein |