PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020244.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 471aa    MW: 53131.4 Da    PI: 5.1442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020244.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054160176117
                  EEETTTTEEESSHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                  y+Cp+Cgk+++  + L+
  Pbr020244.2 160 YVCPNCGKRYNALDALQ 176
                  9**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134430.8846137IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005313.0E-6638208IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PfamPF020022.8E-64093IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
SuperFamilySSF467852.43E-54093IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-44295IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.105.5E-21146205IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577832.64E-9146201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSIEPFNKLV KLTARAFYDD IPTKGENQPK TGRSDNRGIA VVVLDALSRR QWVREEDLAK  60
DLKLHSKQLR RTLRFFEEEK LVTRDHRRET AKGAKVHNAA VAATGDGPPV KEGEEKVKMH  120
THSYCCLDYA QIYDVVRYRL HRLRKKLKDE LEDKNTVQEY VCPNCGKRYN ALDALQLVSM  180
EDEYFHCESC NGELVAESDK LASQEVVGDG DDNARRRRRE KLKDLLQKME VQLKPLMDQI  240
NRVKDLSPPE FGSLQAWEAR ASAARRAENG ESSAMDPSKS SHGMGYGGTP MPFLGDTKVE  300
VDFSGVEGKG KDIKSEADGT SLKVLPPWMI KQGMNLTKEQ RGEVKQEQKM DAIGSVAAPE  360
FSEDKKFSTE NNEKNIQDEY LKAYYAALIK RQQEEEAKKA QETQISDGPS AVSPNRRVGM  420
KSKREDEGEG NVDWEEAPVT GNAENYKVHD LNVEADAIAD DEDEIDWEEG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W4e-15939212368TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W4e-15939212368TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5sva_h4e-15939212368Transcription initiation factor IIE subunit alpha
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020244.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346744.10.0PREDICTED: general transcription factor IIE subunit 1-like
TrEMBLA0A498JTL10.0A0A498JTL1_MALDO; Uncharacterized protein
STRINGXP_009346744.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811