PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020185.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28212.7 Da    PI: 8.0917
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020185.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienksnrqvtfskRrng+lKKA+ELSvLCdaeva+iifs +gklye+ss
  Pbr020185.1  9 KRIENKSNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSGRGKLYEFSS 59
                 79***********************************************96 PP
2K-box94.32e-31821739100
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    ++ +++++qe+ +L+ ++e Lq++qR+llGedL +L+ keL++Le+qLe+sl+kiRs+K++++l+q+++lq++e++l e+nkaLr+klee
  Pbr020185.1  82 RPANGSQNSYQEYLQLETRVEVLQQSQRNLLGEDLATLNKKELEELEHQLETSLNKIRSTKTQFMLDQLSDLQNREQMLVEANKALRRKLEE 173
                  5567789**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-33278IPR002100Transcription factor, MADS-box
CDDcd002651.43E-45279No hitNo description
PRINTSPR004042.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2785171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.28587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKVELKR IENKSNRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSG RGKLYEFSSS  60
LSMMKTLEKY QRCSYSSVDA NRPANGSQNS YQEYLQLETR VEVLQQSQRN LLGEDLATLN  120
KKELEELEHQ LETSLNKIRS TKTQFMLDQL SDLQNREQML VEANKALRRK LEETSEQAPQ  180
FMAWEAAGHG HNNIQQTWLP SNSEAFFHPL GGNNSTYQIG CTHLGSHNGM NVGNPGQHDN  240
GYIPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-26751711101Developmental protein SEPALLATA 3
4ox0_B2e-26751711101Developmental protein SEPALLATA 3
4ox0_C2e-26751711101Developmental protein SEPALLATA 3
4ox0_D2e-26751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020185.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6514030.0JN651403.1 Malus x domestica cultivar Royal Gala MADS-box transcription factor (MADS6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346217.10.0PREDICTED: MADS-box protein CMB1-like isoform X2
SwissprotQ7Y0401e-103EJ2_SOLLC; MADS-box protein EJ2
TrEMBLG5DFD91e-172G5DFD9_MALDO; MADS-box transcription factor
STRINGXP_009346217.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.28e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]