PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | SBP | ||||||||
Protein Properties | Length: 542aa MW: 59200 Da PI: 7.9662 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.7 | 3e-42 | 159 | 234 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk+++v+++g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Pbr020183.1 159 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTAKVIINGIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPQ 234 **************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-33 | 154 | 220 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.351 | 156 | 233 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.22E-39 | 157 | 236 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-31 | 159 | 232 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MESWSCISEG KGFVVSDETI SHTDSLSRSR NGLMGWELKI PCTFMESQGF GELGNLGLPE 60 MVGKHLQNDS IRDVVSTSIS TPNLFSGEAE SSSRISSSIV DSSSRDSSLI DLKLGRLADH 120 KGVHSSKLSK GTPMLSSSES STPTKRMRVS GVYSQPAYCQ VYGCNKDLSS CKDYHKRHKV 180 CEVHSKTAKV IINGIEQRFC QQCSRFHLLG EFDDGKRSCR KRLAGHNERR RKPQIGSHSG 240 RAERFPQSFD GGRFEGNMLT TASFICQEIL PSGNLNPEKY GTSDWCRRLK AEGGTHYRPF 300 LGMPVANGHL HSKPVLPSYD IGKQYPPLHE NRTNPQNASI FGQNGSQYPQ DVRGLSSGSH 360 SIFHETALGS QNLNVFDTAS AVQGLLGISD SGCALSLLSS QSQNSSSYFS GIPIARPLVI 420 PASHNFPSSG INSGAGNHLS PIPLSNGCDD TDDFGISDGI FQGSGFVNTK DRLPSQDGAT 480 INLLQLSSHL QRVEDQRQSM LVKQENDAFC FTENHLKSDL QIRTRSVNAC RSWEQIYHGS 540 P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 159 | 232 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020183.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346206.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_018500621.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A498JRF1 | 0.0 | A0A498JRF1_MALDO; Uncharacterized protein | ||||
STRING | XP_009346206.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-46 | SBP family protein |