PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr020171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 378aa MW: 42022.4 Da PI: 8.5107 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.2 | 2.2e-28 | 61 | 183 | 3 | 101 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa.....sec. 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl ++ i++l+ + + + Pbr020171.1 61 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDITEQDIDKLPPLqvphgfghqfhqpmlnphkasN---SlvapfF-Dv 154 78*************************************************************7777666666665555432220...1222221.02 PP TCP 74 .eaesssssasnsssgkaaksaakskksq 101 ++ ++ ++++++ +++ak + + ++ Pbr020171.1 155 nSTFMEADQVDHQEVHDQAKGKSIRTNDG 183 22233333333333333333333222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-27 | 62 | 185 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.35 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
MITNSRDKGF QAKQEGHNNN NNNDGNNNSN FHKASSSSTT TSRQWSGFRN PRIVRVSRTF 60 GGKDRHSKVS TVRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVIDWLL DITEQDIDKL 120 PPLQVPHGFG HQFHQPMLNP HKASNSLVAP FFDVNSTFME ADQVDHQEVH DQAKGKSIRT 180 NDGQDDQNRH DHEGNVSGQL LAQKLFPIGN HPSSIPGLLN NAMAYNYYHN YSEPSTLSLA 240 QFGSHEFPQV PQIDQHHSHM MSTNALSFST PLPSVSQLFF CPPTATPTLF GSYPPYITNP 300 IVEGTSTATD QPRQANHFQF LSSPSNSQNF LANNALMPPL HSVSSSLKSF PSLVHPKQQL 360 HLNSQNNNGS QPNKDVP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr020171.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346052.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A498JRI1 | 0.0 | A0A498JRI1_MALDO; Uncharacterized protein | ||||
STRING | XP_009346052.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 9e-48 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |