PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020130.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 350aa    MW: 37432.6 Da    PI: 7.0472
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020130.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.66.2e-33117173360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                   vrY+eClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e
  Pbr020130.1 117 IVRYRECLKNHAANIGGNVFDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 173
                  589*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-23118171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-30118170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-30119170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.979120169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.7E-29254316IPR009057Homeodomain-like
SuperFamilySSF466891.85E-18254316IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27255312IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDFRAQDNEM RTSGSLSYAH LSTKESSPSS AAAAPAADHQ QKRRLGIHNG TGSYGSATAP  60
HHQHQTLDNH NPAALPLQPL IRDPDPDRAL SGTPVAPHGA GLSGGGGGGG PKSLGKIVRY  120
RECLKNHAAN IGGNVFDGCG EFMPSGEEGT LEALKCAACD CHRNFHRKEV DGETAAFSPG  180
SRRSSIMLTP LQLPPPLPSS SALHHHHHHH QKYSMPPIVQ PVNVAFGSGG GGTESSSEDL  240
NAFEGGAVPP FALSKKRFRT KFTVEQKERM MEFAERVEWR IQKQDEEEVE RFCAEVGVKR  300
QVLRVWMHNN KNTIKKQGDV TATTNAIATG LSFDNVEGEG GEGAAAAED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-252543131675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364948.10.0PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9FRL53e-68ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A498HNU60.0A0A498HNU6_MALDO; Uncharacterized protein
STRINGXP_009364948.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.18e-57homeobox protein 21