PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9987.04 Da PI: 6.5342 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 5 | 52 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT+ +l+ +a + + ++ +W+ ar +g g++ +++k ++q++ Pbr020123.1 5 GSWTARQNKLFENALAVYDKDtpdRWHNLARAVG-GKSVEEVKRHYQML 52 89********************************.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.552 | 2 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-8 | 3 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-7 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-5 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-6 | 6 | 53 | No hit | No description |
SuperFamily | SSF46689 | 5.15E-13 | 6 | 60 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MESSGSWTAR QNKLFENALA VYDKDTPDRW HNLARAVGGK SVEEVKRHYQ MLVEDVSKIE 60 AGEVPLPNYR KSGGGSTKSY SRDIEEER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-31 | 3 | 74 | 7 | 78 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020123.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336315.1 | 4e-60 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_009364794.1 | 4e-60 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-33 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A498HR46 | 8e-56 | A0A498HR46_MALDO; Uncharacterized protein | ||||
STRING | XP_009336315.1 | 2e-59 | (Pyrus x bretschneideri) | ||||
STRING | XP_009364794.1 | 2e-59 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 4e-36 | RAD-like 6 |