PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 562aa MW: 63097 Da PI: 9.3314 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55 | 1.4e-17 | 18 | 103 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s l+s rl +p +f+++++gk+ s + l +sg W+v+l + g+ +l GW Fv+++ ++ gDf++F++dg+ +f +v +f++ Pbr020043.1 18 SADLSSERLKIPERFMRHMEGKT--SGLVALFGPSGSAWSVEL--IEQNGGLFLHHGWPAFVRDHYVECGDFLIFRYDGDLRF--TVLIFDQ 103 66788999********8888885..448***************..888899**************************997666..9999987 PP | |||||||
2 | B3 | 46.5 | 6.4e-15 | 247 | 326 | 14 | 96 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l +p kf +h ++++++++l++ +g+sW+v+ ++ +++l +GW Fv+ n+++ gD+++F+l+++ ef +v++ Pbr020043.1 247 YTLNIPYKFSVAHL--PNCKVKIVLQNWKGESWTVNSVPsNRVHTSHTLCGGWMAFVRYNDIQLGDICTFELMRECEF--RVHI 326 4689*****99996..45999***************9555666667***************************99999..4544 PP | |||||||
3 | B3 | 47.8 | 2.6e-15 | 453 | 546 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k++++ + + s l +p +f +e+ + +++++l++++g+ W+v+ + k++ +++ +GW Fv+ n+++ gD+++F+l+g++e + v+ Pbr020043.1 453 FVKIMKKFNISGSYTLKIPYQFSTEYlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDINIGDVCIFELVGKDE--MQVH 544 778888888888889***********533....4468***************5544444379999**********************98443..5666 PP EE CS B3 96 vf 97 + Pbr020043.1 545 IS 546 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-22 | 9 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-22 | 9 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.75E-18 | 11 | 102 | No hit | No description |
PROSITE profile | PS50863 | 14.466 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-12 | 13 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-15 | 18 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-23 | 226 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-23 | 227 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-17 | 232 | 326 | No hit | No description |
SMART | SM01019 | 7.1E-12 | 234 | 330 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.197 | 234 | 330 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-12 | 247 | 326 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-22 | 445 | 546 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-23 | 446 | 546 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.43E-19 | 451 | 545 | No hit | No description |
SMART | SM01019 | 9.8E-13 | 453 | 549 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-13 | 453 | 546 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.211 | 453 | 549 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MAEEAGNVRS PHFFAFYSAD LSSERLKIPE RFMRHMEGKT SGLVALFGPS GSAWSVELIE 60 QNGGLFLHHG WPAFVRDHYV ECGDFLIFRY DGDLRFTVLI FDQSACEKEA AFRFGYGQDS 120 RNFEKYMYMG RKRGREEVAS SGNKLVDGAV KKIRNGSSQF RSECIGEGRE EETCSTEKNP 180 HENPGLDVVS YKAKASIQNM CGKGDGLNVH GKVCMQMSSA HEVAPSFSSS NPYFVRIIKS 240 FNISGSYTLN IPYKFSVAHL PNCKVKIVLQ NWKGESWTVN SVPSNRVHTS HTLCGGWMAF 300 VRYNDIQLGD ICTFELMREC EFRVHIQKGE TSSWLSPGLA VTTHKTIKCL SKKMKGNSPK 360 VLSKSIREIA DKLSSKKDQD AAFINDTRKY GSTSRSLTKA ALAQSKVASK KLVNRRKKVV 420 EDELDSKSSG LRIKLTLDEE RIARSFTSCY PNFVKIMKKF NISGSYTLKI PYQFSTEYLP 480 NYKTEIVLRN SKGECWTVNS VPDSKGRVVH TFCGGWMAFV RGNDINIGDV CIFELVGKDE 540 MQVHISSVGK KGFEADKEHL M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020043.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364120.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A498HUF1 | 0.0 | A0A498HUF1_MALDO; Uncharacterized protein | ||||
STRING | XP_009364120.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-17 | B3 family protein |