PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020043.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 562aa    MW: 63097 Da    PI: 9.3314
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020043.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.4e-1718103899
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  s  l+s rl +p +f+++++gk+  s  + l  +sg  W+v+l    + g+ +l  GW  Fv+++ ++ gDf++F++dg+ +f  +v +f++
  Pbr020043.1  18 SADLSSERLKIPERFMRHMEGKT--SGLVALFGPSGSAWSVEL--IEQNGGLFLHHGWPAFVRDHYVECGDFLIFRYDGDLRF--TVLIFDQ 103
                  66788999********8888885..448***************..888899**************************997666..9999987 PP

2B346.56.4e-152473261496
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    l +p kf  +h   ++++++++l++ +g+sW+v+    ++   +++l +GW  Fv+ n+++ gD+++F+l+++ ef  +v++
  Pbr020043.1 247 YTLNIPYKFSVAHL--PNCKVKIVLQNWKGESWTVNSVPsNRVHTSHTLCGGWMAFVRYNDIQLGDICTFELMRECEF--RVHI 326
                  4689*****99996..45999***************9555666667***************************99999..4544 PP

3B347.82.6e-15453546197
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+k++++ + + s  l +p +f +e+  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l+g++e  + v+
  Pbr020043.1 453 FVKIMKKFNISGSYTLKIPYQFSTEYlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDINIGDVCIFELVGKDE--MQVH 544
                  778888888888889***********533....4468***************5544444379999**********************98443..5666 PP

                  EE CS
           B3  96 vf 97 
                  + 
  Pbr020043.1 545 IS 546
                  65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-229106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-229106IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-1811102No hitNo description
PROSITE profilePS5086314.46611104IPR003340B3 DNA binding domain
SMARTSM010194.2E-1213104IPR003340B3 DNA binding domain
PfamPF023621.6E-1518103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-23226328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-23227327IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-17232326No hitNo description
SMARTSM010197.1E-12234330IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197234330IPR003340B3 DNA binding domain
PfamPF023625.9E-12247326IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-22445546IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-23446546IPR015300DNA-binding pseudobarrel domain
CDDcd100176.43E-19451545No hitNo description
SMARTSM010199.8E-13453549IPR003340B3 DNA binding domain
PfamPF023625.2E-13453546IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211453549IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAEEAGNVRS PHFFAFYSAD LSSERLKIPE RFMRHMEGKT SGLVALFGPS GSAWSVELIE  60
QNGGLFLHHG WPAFVRDHYV ECGDFLIFRY DGDLRFTVLI FDQSACEKEA AFRFGYGQDS  120
RNFEKYMYMG RKRGREEVAS SGNKLVDGAV KKIRNGSSQF RSECIGEGRE EETCSTEKNP  180
HENPGLDVVS YKAKASIQNM CGKGDGLNVH GKVCMQMSSA HEVAPSFSSS NPYFVRIIKS  240
FNISGSYTLN IPYKFSVAHL PNCKVKIVLQ NWKGESWTVN SVPSNRVHTS HTLCGGWMAF  300
VRYNDIQLGD ICTFELMREC EFRVHIQKGE TSSWLSPGLA VTTHKTIKCL SKKMKGNSPK  360
VLSKSIREIA DKLSSKKDQD AAFINDTRKY GSTSRSLTKA ALAQSKVASK KLVNRRKKVV  420
EDELDSKSSG LRIKLTLDEE RIARSFTSCY PNFVKIMKKF NISGSYTLKI PYQFSTEYLP  480
NYKTEIVLRN SKGECWTVNS VPDSKGRVVH TFCGGWMAFV RGNDINIGDV CIFELVGKDE  540
MQVHISSVGK KGFEADKEHL M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364120.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A498HUF10.0A0A498HUF1_MALDO; Uncharacterized protein
STRINGXP_009364120.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-17B3 family protein