PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020001.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 330aa    MW: 36782.1 Da    PI: 7.0329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020001.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.6e-28170229159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p v++ tYegeHnh 
  Pbr020001.1 170 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQKSAENPCVLVATYEGEHNHM 229
                  58***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-28162231IPR003657WRKY domain
PROSITE profilePS5081125.993165231IPR003657WRKY domain
SuperFamilySSF1182903.14E-24167231IPR003657WRKY domain
SMARTSM007742.4E-31170230IPR003657WRKY domain
PfamPF031062.8E-23171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDSTWVNTSL GLNLVPLCSA DDHQAPATMQ HELERDYAQF QGNNALVKEE VASHHDVWAE  60
ELNRISVENK KLTETLTALC ENYNSLQSHL RELMITKQQQ NNSSDIYRKR KAGSEDYNNV  120
IGLISPGTNT DTSSISDDQE YSCKRPKEHT NLKISRVYVR TDASDTRLIV KDGYQWRKYG  180
QKVTRDNPSP RAYYKCSFAP SCPVKKKVQK SAENPCVLVA TYEGEHNHMH PESRAEITLI  240
APVSPNQNQQ LITSTPLSVS PSMAKRSAPP TFSCDINRIS PNTTMCPQET EAAAFQQFLI  300
QQMASSLTKD PNFTSALAAA ISGRISDHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-191692311677Probable WRKY transcription factor 4
2lex_A7e-191692311677Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129070.0JX112907.1 Malus x domestica WRKY transcription factor 40b mRNA, complete cds.
GenBankJX1129130.0JX112913.1 Malus hupehensis WRKY transcription factor 40b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363710.10.0PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLA0A498HUB30.0A0A498HUB3_MALDO; Uncharacterized protein
STRINGXP_009363710.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.27e-73WRKY DNA-binding protein 18