PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11210.3 Da PI: 4.2531 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.3e-07 | 14 | 43 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktI 27 rg+WT Ed++l+++v+++G + ktI Pbr019904.1 14 RGPWTDVEDQILLEYVREMGETierNRKTI 43 89******************9888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-7 | 6 | 34 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00852 | 16 | 34 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MGRSSSCEKD GLRRGPWTDV EDQILLEYVR EMGETIERNR KTIEDFAEEA ASSLETDSHF 60 TKELRQPSDG IEAKNTEAVS DSRDGFLYQT LMTVICGGSS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019904.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008337002.1 | 4e-20 | transcription factor WER-like | ||||
STRING | XP_008337002.1 | 1e-19 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-09 | myb domain protein 14 |