PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019891.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 374aa MW: 42398.6 Da PI: 4.6609

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019891.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.9	1.3e-25	285	335	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l+dl+ yF+lpi++AA+ L+vc+Tv+KriCR+ G++RWP+Rki+s+ Pbr019891.1 285 TASMTLDDLRDYFHLPIEKAARRLKVCPTVVKRICRRSGLNRWPSRKIRSI 335 6899*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.791	275	355	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-23	287	335	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MADPRAVVPY QDPYDNGPCS DIMNFLYDSE HPILDESLPL PPLDDEGLAC PTRPIPLFDE 60 GIQDLSDPLL DQATWDFLYQ CSNGGGNFVS QAGPSQFIGE SRGSNPPRGD NNEQNQGFGD 120 PRPLSVWPAT PVPFNCSCCQ LLREIIHLNG NHVMKLDIHG RFGMISHAIL YSVDVNSSDN 180 HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYILQQDPMA VFYEALCIGL EWDDILNTDD 240 FTFPPSPPNS GRVGEVEQQQ PADDQPHAAE DENERISLAA QRERTASMTL DDLRDYFHLP 300 IEKAARRLKV CPTVVKRICR RSGLNRWPSR KIRSINRQIL RIRPSLDSDD ANTRVHAEAE 360 ISRLERKRTE LVP*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MADPRAVVPY QDPYDNGPCS DIMNFLYDSE HPILDESLPL PPLDDEGLAC PTRPIPLFDE  60
GIQDLSDPLL DQATWDFLYQ CSNGGGNFVS QAGPSQFIGE SRGSNPPRGD NNEQNQGFGD  120
PRPLSVWPAT PVPFNCSCCQ LLREIIHLNG NHVMKLDIHG RFGMISHAIL YSVDVNSSDN  180
HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYILQQDPMA VFYEALCIGL EWDDILNTDD  240
FTFPPSPPNS GRVGEVEQQQ PADDQPHAAE DENERISLAA QRERTASMTL DDLRDYFHLP  300
IEKAARRLKV CPTVVKRICR RSGLNRWPSR KIRSINRQIL RIRPSLDSDD ANTRVHAEAE  360
ISRLERKRTE LVP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019891.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016647903.1	0.0	PREDICTED: uncharacterized protein LOC107880544
TrEMBL	A0A498HVT1	0.0	A0A498HVT1_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	7e-15	Nin-like family protein