PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019807.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 374aa    MW: 41220.3 Da    PI: 7.4641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019807.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08134155426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++f++ G+C+ Gd+C FaHg
  Pbr019807.1 134 AACPDFRK-GHCPKGDSCEFAHG 155
                  78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.79482119IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6130156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.44E-5130159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324131157IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6134155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-6135157IPR000571Zinc finger, CCCH-type
SMARTSM0035622165188IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.986165189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMLGEPTRVH PTIQVPPWDS FDDHNPTSPF PIPIHSVNYN GNASNGGDFS PLSPVFLDSL  60
AALHRYLPSN ESDSLAEDPD IPMNPISCDQ FRMFEFKVRR CARGRSHDWT DCPYAHPGEK  120
ARRRDPRKYH YSGAACPDFR KGHCPKGDSC EFAHGVFECW LHPARYRTQP CKDGLGCNRR  180
VCFFAHTPEQ LRVLPGQSPR TQGSGAFDSY PFGSPPTSIL MSPPLSPPSE SPPMSPNSPQ  240
VGHNSVSELV ASMRNFKLAK MKMNSPPAWG AQMGSGFGPS PRGSAFRSGF CSLPSTPSRT  300
TGRVGPNPVD LWDQPCEEEP AMERVESGRD LRARMYARMY ERLSKENSFG RVACVDSGSS  360
APDVGWISEL VSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361457.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-112C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLD9ZIV30.0D9ZIV3_MALDO; C3HL domain class transcription factor
STRINGXP_009361457.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-111C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]