PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019805.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 398aa    MW: 44989.7 Da    PI: 6.4648
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019805.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093253592155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Pbr019805.1 325 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 359
                  669*****************************885 PP
2ELK37.84.2e-13279300122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  Pbr019805.1 279 ELKNHLLRKYSGYLSSLKQELS 300
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-19130174IPR005540KNOX1
PfamPF037908.3E-21131173IPR005540KNOX1
SMARTSM012562.9E-28181232IPR005541KNOX2
PfamPF037915.9E-24185230IPR005541KNOX2
SMARTSM011883.5E-7279300IPR005539ELK domain
PROSITE profilePS5121311.296279299IPR005539ELK domain
PfamPF037892.8E-10279300IPR005539ELK domain
PROSITE profilePS5007112.957299362IPR001356Homeobox domain
SuperFamilySSF466891.75E-19300374IPR009057Homeodomain-like
SMARTSM003892.8E-13301366IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-27304365IPR009057Homeodomain-like
CDDcd000861.29E-11311363No hitNo description
PfamPF059201.2E-16319358IPR008422Homeobox KN domain
PROSITE patternPS000270337360IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEDYNNQMDH ESSGGRGNFL YASPNLGGNY GRAASDHQMG INTFHLQSSG GGGGGGSGDQ  60
CNFQSPGTHP INVKTEATTS QHGHQKFQYN SNNNNHLVSS SRGHQPVVHQ LQNNLNLLND  120
DHSLSSNEVE AIKAKIIAHP QYSNLLEAYM DCQRVGAPSD VMARLSVARQ EFEARQRSSG  180
TSRETSKDPE LDQFMEAYYD MLVKYREELT RPIQEAMDFM RRIETQLNML GNNNNAPPLR  240
IFSPSEDKCE GIGSSEEEQE NSGGETEVPE IDPRAEDREL KNHLLRKYSG YLSSLKQELS  300
KKKKKGKLPK DARQKLLSWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW  360
KPSEDMQFMV MDGLHPQNAA LYMDGHYIGD GHYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ719790.0Z71979.1 M.domestica mRNA for kn1-like protein (1791 bp).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361436.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLD9ZJ200.0D9ZJ20_MALDO; HD domain class transcription factor
STRINGXP_009361436.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-125KNOTTED-like from Arabidopsis thaliana