PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRF | ||||||||
Protein Properties | Length: 582aa MW: 62543 Da PI: 8.5736 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.4 | 3e-24 | 206 | 250 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e Pbr019785.1 206 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHMNRGRHRSRKPVEG 250 79****************************************985 PP | |||||||
2 | QLQ | 61.4 | 2.4e-21 | 136 | 172 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P+ Ll++i+k Pbr019785.1 136 GPFTPSQWMELEHQALIYKYITANMPIPSTLLAPIKK 172 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.3E-13 | 136 | 172 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.0E-15 | 137 | 170 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.433 | 137 | 172 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.916 | 206 | 250 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.7E-20 | 207 | 249 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MDLGVVGFGG LGGGCSSDSG FPLAATSSAD QEAAKHKWLY GSGYHRQWRS ADEEDWRSSK 60 LAKTDDFSSS NAMQQQQSLS FSNSPNPEAV LVEKNAAMPY FHQALPAYNR TSAGHNSGSL 120 SNGAAAMHWS TAGGRGPFTP SQWMELEHQA LIYKYITANM PIPSTLLAPI KKALDSAGFS 180 TFPNGLLRPN SLGWGSIHLG FSNNTDPEPG RCRRTDGKKW RCWRDAVPDQ KYCERHMNRG 240 RHRSRKPVEG QTGHTGTTTS KQPLASSSST SVVSIPGGDG GGSSSHAIAN QQLKSLQQPA 300 ASNSSAAATQ MNRMFMNKEN AGGRIQHTPG LTMLSKENPF STQKQQIGCE ESSRTEFGLV 360 SSDSLLNPSQ KRSYPAETNS QQHSLRHFID DWPKTQSDRQ PVSWPNQLGM QSDRTQLSIS 420 IPIASSTSSE KLTLSPLRLS RELESPAPMG LGTDSSHTLN EQNNMKQANW IPIAWETSLG 480 GPLGEVLHNP NSNTNAVEYK NNSSVLNLMT GGSWDNNNNS PSSLGSSPTG VLQKTAFGSL 540 SNSSAGSSPR AENNNKSHEG FSLCNDLLGS NMLNSSSLPA L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019785.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009361143.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | A0A498HN75 | 0.0 | A0A498HN75_MALDO; Uncharacterized protein | ||||
STRING | XP_009361143.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2085 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 3e-73 | growth-regulating factor 2 |