PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HSF | ||||||||
Protein Properties | Length: 383aa MW: 43050.3 Da PI: 7.6331 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.3 | 8.1e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++i+ Pbr019653.1 25 FLTKTYQLVDDPTTDHIVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 112 9*****************************************************************99.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Pbr019653.1 113 RRKTA 117 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.7E-38 | 17 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-60 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.59E-34 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.5E-32 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MALMIDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGDDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPH 120 QVGLSHHHHH SQLGMNGHHH HPGFFPFPSP GSISPSDSDE QPNWCDSDSP PLLSPTGGIN 180 TNINSNNNNF MNINNNNTTV AGLAEDNERL RRSNTMLMSE LAHMRKLYND IIYFVQNHVK 240 PVAPSNSYPS SMLLCNPQPP KHNGPNGNLN QLLGYYPAAP PPNAKQNPHH IMNSSSPMSN 300 TTSKSSSVTI LEDHHQQPPS GNNGCKNTKL FGVPLLHSKK RLHPEEYGSN NHHGNNMMEA 360 SKARLILEKD DLGLHLMPPS RC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019653.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376881 | 2e-75 | AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009359791.1 | 0.0 | PREDICTED: heat stress transcription factor B-4 | ||||
Swissprot | Q9C635 | 1e-119 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | D9ZJ32 | 0.0 | D9ZJ32_MALDO; HSF domain class transcription factor | ||||
STRING | XP_009359791.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-101 | heat shock transcription factor B4 |