PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr019593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 233aa MW: 25571.5 Da PI: 9.3087 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 186.6 | 9.3e-58 | 15 | 158 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 +++CqdCGnqakk+Ca+ RCRtCCk +gf+C+thvkstWvp+++rr+ +qql + ++ a+ ++ ++ ++r+ a+ + ++ ++s + + Pbr019593.1 15 GSRCQDCGNQAKKECAYFRCRTCCKGKGFHCQTHVKSTWVPVYRRRHThHQQLPSIDPQHPAHLHQGHNYNPRRP------AAGHVITNPSSSGQDQQ 106 679*******************************************97356666666666666677776666654......33333344445667788 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++P+ev+s+a frcvrvssv+d ++ aYqt+v igGhvfkGiL dqG++ Pbr019593.1 107 VNNFPAEVNSMATFRCVRVSSVEDTVNKHAYQTSVVIGGHVFKGILSDQGPN 158 999***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.0E-54 | 15 | 158 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.9E-26 | 18 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.4E-22 | 110 | 157 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MVRQGRGGRE EEIMGSRCQD CGNQAKKECA YFRCRTCCKG KGFHCQTHVK STWVPVYRRR 60 HTHHQQLPSI DPQHPAHLHQ GHNYNPRRPA AGHVITNPSS SGQDQQVNNF PAEVNSMATF 120 RCVRVSSVED TVNKHAYQTS VVIGGHVFKG ILSDQGPNYT TAAGQSSSSQ HVMNKETSNF 180 ISAAASASNI TASTSSAAAD HQVPYHHQLP SSYPLIPFNA FMPGTQFFLN PK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr019593.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376523.1 | 1e-175 | PREDICTED: protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9SD40 | 2e-48 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A498K002 | 1e-163 | A0A498K002_MALDO; Uncharacterized protein | ||||
STRING | XP_009376523.1 | 1e-175 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G21400.1 | 3e-48 | SHI-related sequence3 |
Publications ? help Back to Top | |||
---|---|---|---|
|