PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019487.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 388aa    MW: 42960.7 Da    PI: 4.6472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019487.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.11.3e-4781361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l pGfrF+Ptd elv++yLk+kv gk+l+  ++++evdi+k+ PwdLp k + ++++ +wyfF+++++ky+tg r++r+t+ gyWkatg+d++vl  +
  Pbr019487.1   8 LSPGFRFSPTDVELVQYYLKRKVMGKRLPY-NFVAEVDIHKYAPWDLPeKsTWQSGDLKWYFFCPTERKYPTGARAKRTTECGYWKATGNDRSVLY-N 103
                  579***************************.89**************95345666778**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  ge+ g  ktL+f++grapkge+tdWvmheyrle
  Pbr019487.1 104 GEVAGKIKTLIFHTGRAPKGERTDWVMHEYRLE 136
                  99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-575158IPR003441NAC domain
PROSITE profilePS5100553.8598158IPR003441NAC domain
PfamPF023652.6E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGKGKSSLSP GFRFSPTDVE LVQYYLKRKV MGKRLPYNFV AEVDIHKYAP WDLPEKSTWQ  60
SGDLKWYFFC PTERKYPTGA RAKRTTECGY WKATGNDRSV LYNGEVAGKI KTLIFHTGRA  120
PKGERTDWVM HEYRLESKDL ANRGVPQESY VLCTIFQKEG PGPKNGAQYG APLMEEDWSD  180
DEAENCSEAV PHANMREPNL VLPSNYNGSI TTSTYSHESI HIRPSSESCI SDAVPLSCHV  240
PQLVSSNHAT VEEPHTSNDD DILSILACFS EESPSLIKEN EKNEELGNVV PIGNDSAAPH  300
VVSDDVYVAL GDLGKVARVG EDGCSFSSLP NSVCATGQMP LGDDGQYLEL DDLGEQFNYH  360
DSTHTRPPMF GEPQTLMGEM PFQDETS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-45715914169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376546.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_009376547.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_009376548.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_009376549.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A498IQ870.0A0A498IQ87_MALDO; Uncharacterized protein
STRINGXP_009376546.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.17e-95NAC domain containing protein 103