PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019385.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 467aa    MW: 52433.3 Da    PI: 5.4082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019385.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.2e-1097134100
                  SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    + l+ +sg +W v+l  r+ +g++++ +GW eF k   L+ g  +vF+++g+s+f  +v +f+ks
  Pbr019385.1   9 NPVCLKLPSGSEWIVEL--RRWDGEVWFDNGWPEFSKFYSLDCGHWLVFRYEGNSKF--NVCIFDKS 71 
                  4588999**********..999999****************************9999..****9985 PP
2B352.96.6e-17193268483
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  v ++ ++ +sg+l+lp +f++   +kk  s +++l+ ++gr+W+v l  r   g+ ++++GW + v +n+L+ gD++vF 
  Pbr019385.1 193 VVMRLSYINSGLLWLPSEFCKLRPIKK--SCEVILQVSDGRTWTVDL--RYEEGKATFRRGWMDIVCDNNLELGDVCVFV 268
                  456889999***********6667775..558***************..77777789**********************7 PP
3B347.82.6e-15337427195
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+ +++ps+ ++   l lp +f + h +kk +  +++l+ ++  +W v l+y   +++  +++GW e v++n+L++gD++vF  ++ +++++++ 
  Pbr019385.1 337 FVVAMSPSYISSYF-LFLPSDFHKVHHIKKSC--EVILRVSNVGTWPVDLNYFSEGKKAKFGRGWMEVVRDNNLESGDVCVFVSIN-NSAKPLFD 427
                  66677777777776.********999988655..8*****************88888899**********************9776.55556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.632171IPR003340B3 DNA binding domain
SMARTSM010190.32171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-15272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-15272IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-10469No hitNo description
Gene3DG3DSA:2.40.330.109.2E-23183285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23184285IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-17189283No hitNo description
PROSITE profilePS5086313.098190285IPR003340B3 DNA binding domain
SMARTSM010194.2E-10191286IPR003340B3 DNA binding domain
PfamPF023622.5E-14193268IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-19331432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-19333426IPR015300DNA-binding pseudobarrel domain
CDDcd100175.69E-17336432No hitNo description
PROSITE profilePS5086312.111336434IPR003340B3 DNA binding domain
PfamPF023621.6E-12337427IPR003340B3 DNA binding domain
SMARTSM010195.9E-13337432IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MKYGEGISNP VCLKLPSGSE WIVELRRWDG EVWFDNGWPE FSKFYSLDCG HWLVFRYEGN  60
SKFNVCIFDK SCTEIEYPLT MPKMELTSHD ESRDNSANDS SDDYGDDLSY KSGDGSGDNS  120
AMILDKFLPC PRKTREKSTL PSPQPHKKRI TSWSGKCDFP TEKYGVTSST PSGEVVALRR  180
AIAFKSQNPS FIVVMRLSYI NSGLLWLPSE FCKLRPIKKS CEVILQVSDG RTWTVDLRYE  240
EGKATFRRGW MDIVCDNNLE LGDVCVFVST SIVIPVFDVF IFRSKEAASC SIDEGKTVPK  300
MEESDQADGK YDVPTESGGS IALQRATAFK SQNPTSFVVA MSPSYISSYF LFLPSDFHKV  360
HHIKKSCEVI LRVSNVGTWP VDLNYFSEGK KAKFGRGWME VVRDNNLESG DVCVFVSINN  420
SAKPLFDVVF FRSGQAAKRT NIDREKTVPA EMEENVDAAA DSVQNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136PRKTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019385.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376478.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A498HUW00.0A0A498HUW0_MALDO; Uncharacterized protein
STRINGXP_009376478.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein