PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019384.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 337aa    MW: 38261.2 Da    PI: 9.8627
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019384.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-15188272896
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  + +l++  l+lp ++  +  ++   s ++tl+ ++gr+W v ++y+k+++++++ +GW eFv++n+L   D++ F l+  +++++++ v
  Pbr019384.1 188 PTYLRRF-LWLPSECR-NLHLVR-DSSKVTLRVSDGRTWHVDMNYDKGKSSFTFCRGWLEFVRDNNLVLDDVCAFVLKT-NNTKPLFDV 272
                  4555554.89998864.555664.4559************************************************976.566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-101270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-101271IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-91367No hitNo description
SMARTSM010191.41586IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-18176270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-18176269IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.448180278IPR003340B3 DNA binding domain
SMARTSM010195.1E-7182276IPR003340B3 DNA binding domain
PfamPF023621.1E-12188272IPR003340B3 DNA binding domain
CDDcd100172.70E-15192273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MASVHGKTDN WPPHFFKAIL EDTSSNRKLS IPKKFGKKYG DKLSNPVLLK LPNGSEWPVE  60
LRRWDGKAWF DNEVAQRLNP QAMPQMDSAD QDDDSDDDLD DYSTHRGKST LPCTRPHKKN  120
RTSSSGKDNF PANKLGEGKS NTRIFEKQRP GYVGRMNPLT KNGKATALDR AEVFKSQNPS  180
SFHVATKPTY LRRFLWLPSE CRNLHLVRDS SKVTLRVSDG RTWHVDMNYD KGKSSFTFCR  240
GWLEFVRDNN LVLDDVCAFV LKTNNTKPLF DVILCRAHDD GEKTVLEIEE GDFLPCPKSE  300
GRSPIAPQSH KKKRISWSPK ARAGPEFLGA WDKILN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019384.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1823892e-32AM182389.1 Pyrus communis satellite DNA, clone EMPc104.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376508.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A498HUW01e-121A0A498HUW0_MALDO; Uncharacterized protein
STRINGXP_009376508.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-10related to vernalization1 1