PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019382.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 322aa    MW: 36982 Da    PI: 8.9927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019382.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.5e-1521112199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+ + +d+++ + + +p kf++++g +  +   + ++ +sg +W+++l  rk +g++++++GW+eF +   L+ g  +vF ++g+s+f  +v++++
  Pbr019382.1  21 FFKIIL-NDTSRDKKIKIPPKFVTKYGDNMSN--PVFFKVPSGLEWKIEL--RKWDGEVWFENGWQEFSSFYSLDYGHLLVFGYEGNSKF--RVRILE 111
                  556553.57777778***********988655..5***************..99999*****************************9999..888887 PP

                  S CS
           B3  99 k 99 
                  +
  Pbr019382.1 112 R 112
                  6 PP
2B353.16e-17218304394
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  kv ++  +l ++ l+lp +f+++h + + +   ++l+ + gr+W vk+ +y+ ++  + l +GWk+Fv++n L  gD +vF+++++  +++++
  Pbr019382.1 218 KVAMTRTYLYRCYLSLPSQFIKKHLNRTVG--YVILRVSGGRTWHVKFeQYDTGR--CRLLGGWKKFVRENSLAIGDECVFTVINT--TKPLF 304
                  6778899999**************666556..699*************3334444..55778********************8764..44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-2115113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2216114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-1719110No hitNo description
PROSITE profilePS5086312.91520113IPR003340B3 DNA binding domain
SMARTSM010195.9E-1421113IPR003340B3 DNA binding domain
PfamPF023623.2E-1222112IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-20212310IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-20212310IPR015300DNA-binding pseudobarrel domain
CDDcd100175.33E-16215310No hitNo description
PROSITE profilePS5086314.029216312IPR003340B3 DNA binding domain
SMARTSM010191.5E-9217312IPR003340B3 DNA binding domain
PfamPF023622.1E-14218303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAFLPREIDD RPTFPPAVPH FFKIILNDTS RDKKIKIPPK FVTKYGDNMS NPVFFKVPSG  60
LEWKIELRKW DGEVWFENGW QEFSSFYSLD YGHLLVFGYE GNSKFRVRIL ERSCTEIDYP  120
LQNTAEKADE DEKSSDDSHD TSYHESGDYS DVGSVEIGEN HTPCTRKTRE KSLLSCPRPR  180
KKNRPSSRGK ANVPAASANA TALERASGFK SDRHPPLKVA MTRTYLYRCY LSLPSQFIKK  240
HLNRTVGYVI LRVSGGRTWH VKFEQYDTGR CRLLGGWKKF VRENSLAIGD ECVFTVINTT  300
KPLFDVVISR QRIECCDLQL E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376477.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A498HUW01e-159A0A498HUW0_MALDO; Uncharacterized protein
STRINGXP_009376477.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-27B3 family protein