PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019357.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 878aa    MW: 97038.3 Da    PI: 7.4026
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019357.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-095515881954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Pbr019357.1 551 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 588
                  664459******************************88 PP
2BELL91.39.6e-304294821972
         BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  Vd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Pbr019357.1 429 VDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 482
                  9**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-67298480IPR006563POX domain
PfamPF075269.3E-48303479IPR006563POX domain
PROSITE profilePS5007112.568529592IPR001356Homeobox domain
CDDcd000863.78E-12532593No hitNo description
SMARTSM003891.2E-9532596IPR001356Homeobox domain
SuperFamilySSF466894.06E-17534599IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28535598IPR009057Homeodomain-like
PfamPF059204.6E-18549588IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MGIATLPPLP PPPPKGNLHH HHYSIDSENY YNPPNSMSQD YHQGIFTFSN GFERSAMTSH  60
QEQQRQQQHH LAQQIRREKL RVQGFETPAP SPLVGLDEEE SSGLPAYETA GMLSEMFNYP  120
PGSGPDSAAA MQLFLMNPSQ PRSPSPPPSH TTSSTLHMLL PNPSTTTNSL QGFAAASGGG  180
GFGQFTWVPE SHQGHEAGGN TAGGGGEIGG VVEGQGLSLS LSTSLQHLEA AKANEFGMGS  240
ESASNLLYYN NQGDHQHEGS STQYKNLVSH HHQASHSLQQ GGVVGGHHVG FGSSSSSFGV  300
VNVLRNSKYV KAAQELLEEF CSVGRGQLKK SKFGGSTSGR HNTTTNPSSN PAGTSGSGGG  360
ASSSLLKDVH PLSAADRIEH QRRKVKLLSM LDEASSYHHI THRKIFMYVS ASLGYDHTVH  420
SNFSRKLLVD RRYNHYCEQM QMVVNAFDLV MGFGAAVPYT ALAQKAMSRH FRCLKDAITA  480
QLKHSCELLG EKDGAGTSGI TKGETPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE  540
RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ  600
EANEEEEEIG GGGGGAASAT ADQERERNNN AGLSAQTPTP TMTTATTPPP TTNSPTGKRS  660
DINASENDSS LIAINRHQQQ QQHHPMIATT TSSAVAPPAS QCFPAAAXXX XXXXXXXXXX  720
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  780
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  840
XXXXXXXXXX XXXXXXXXXX XXXXXXXNFH SMKKDTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16538596563Homeobox protein Meis2
3k2a_B2e-16538596563Homeobox protein Meis2
4xrm_A2e-16538596563Homeobox protein Meis2
4xrm_B2e-16538596563Homeobox protein Meis2
4xrs_A2e-16538595158Homeobox protein Meis1
4xrs_B2e-16538595158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019357.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0537690.0AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507387.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW801e-156BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A498HX670.0A0A498HX67_MALDO; Uncharacterized protein
STRINGXP_009376500.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-134BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]