PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019352.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 688aa    MW: 73579.2 Da    PI: 7.5687
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019352.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-094214581954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Pbr019352.2 421 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 458
                  664559******************************88 PP
2BELL91.77e-302993521972
         BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  Vd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Pbr019352.2 299 VDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 352
                  9**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-67168350IPR006563POX domain
PfamPF075266.1E-48173349IPR006563POX domain
PROSITE profilePS5007112.568399462IPR001356Homeobox domain
SMARTSM003891.2E-9402466IPR001356Homeobox domain
CDDcd000864.36E-12402463No hitNo description
SuperFamilySSF466892.95E-17403469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-29405468IPR009057Homeodomain-like
PfamPF059203.4E-18419458IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MQLFLMNPSQ PRSPSPPPSH TTSSTLHMLL PNPSTTTNSL QGFAAASGGG GFGQFTWVPE  60
SHQGHEAGGN TAGGGGEIGG VVEGQGLSLS LSTSLQHLEA AKANEFGMGS ESASNLLYYN  120
NQGDHQHEGS STQYKNLVSH HHQASHSLQQ GGVVGGHHVG FGSSSSSFGV VNVLRNSKYV  180
KAAQELLEEF CSVGRGQLKK SKFGGSTSGR HNTTTNPSSN PAGTSGSGGG ASSSLLKDVH  240
PLSAADRIEH QRRKVKLLSM LDEASSYHHI THRKIFMYVS ASLGYDHTVH SNFSRKLLVD  300
RRYNHYCEQM QMVVNAFDLV MGFGAAVPYT ALAQKAMSRH FRCLKDAITA QLKHSCELLG  360
EKDGAGTSGI TKGETPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL  420
FEHFLHPYPS DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ EANEEEEEIG  480
GGGGGAASAT ADQERERNNN AGLSAQTPTP TMTTATTPPP TTNSPADQER ERNNNAGLAA  540
QTPTPTTTTT TTTTNSPASK RSDINASEND PSLAAINRHQ QQQHHPMMAT TTSTAVAPPA  600
YQCFPPAASD DTGRSYGTTS ANANIAAHHD HQNSSNIDSS TTLISFGTTT AAGDVSLTLG  660
LRHAGGGGGN NMPDKTSSFS IRDFGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17408465158Homeobox protein Meis1
4xrs_B3e-17408465158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019352.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0537690.0AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507387.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW801e-146BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A498KII20.0A0A498KII2_MALDO; Uncharacterized protein
STRINGXP_009376500.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-137BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]