PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019340.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26342.4 Da    PI: 8.465
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019340.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.87.7e-251962851
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rqvtfskRr gi+KKAeELS+LC+ evaviifs+tgkl+++ss
  Pbr019340.1 19 ARQVTFSKRRRGIFKKAEELSILCESEVAVIIFSQTGKLFDFSS 62
                 79****************************************96 PP
2K-box44.28e-16881721498
        K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   +  +++  +L ke+e   r++R+l+GedL++L+l eLq+Le+ +e s  +++++K++ ++++i  l kk +el e+n++L++++
  Pbr019340.1  88 LQLEKENTIRLSKELEDKTRKLRQLKGEDLHDLDLDELQKLEKLVEASHGRVKETKEKKIMSEIMALAKKGDELVEANNQLKQRM 172
                  5666777889999999999**************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-30463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.198464IPR002100Transcription factor, MADS-box
CDDcd002652.23E-31577No hitNo description
PRINTSPR004045.2E-22626IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-28693IPR002100Transcription factor, MADS-box
PfamPF003195.8E-221960IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-222641IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-224162IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.60988178IPR002487Transcription factor, K-box
PfamPF014866.7E-1488172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVKIRKEKIK IRRIDYLPAR QVTFSKRRRG IFKKAEELSI LCESEVAVII FSQTGKLFDF  60
SSSSTKDVIA RYKSHIGEKS NQPMLDQLQL EKENTIRLSK ELEDKTRKLR QLKGEDLHDL  120
DLDELQKLEK LVEASHGRVK ETKEKKIMSE IMALAKKGDE LVEANNQLKQ RMVMLSARGD  180
IGPTAIKELE NLNNGGEEGV TSESATNVTI CSNSPLSLED DCSDILSLKL GLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-15683375MEF2C
5f28_B7e-15683375MEF2C
5f28_C7e-15683375MEF2C
5f28_D7e-15683375MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5047170.0AB504717.1 Pyrus pyrifolia var. culta PpMADS13-2 mRNA for dormancy-associated MADS-box transcription factor, complete cds.
GenBankAB7744750.0AB774475.1 Pyrus pyrifolia var. culta PpMADS13-2tw mRNA for dormancy-associated MADS-box transcription factor, complete cds, cultivar: TP-85-119.
GenBankKP1640270.0KP164027.1 Pyrus pyrifolia clone PpDAM1 DAM1-like MADS-box protein mRNA, complete cds.
GenBankKR3493080.0KR349308.1 Pyrus pyrifolia cultivar mixue dormancy-associated MADS-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376226.11e-166PREDICTED: MADS-box protein AGL24-like isoform X1
SwissprotO827946e-61AGL24_ARATH; MADS-box protein AGL24
TrEMBLA0A1B2LP651e-157A0A1B2LP65_MALDO; Dormancy-associated MADS box 2 protein
STRINGXP_009376226.11e-165(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.17e-43AGAMOUS-like 24
Publications ? help Back to Top
  1. Ramamoorthy R,Phua EE,Lim SH,Tan HT,Kumar PP
    Identification and characterization of RcMADS1, an AGL24 ortholog from the holoparasitic plant Rafflesia cantleyi Solms-Laubach (Rafflesiaceae).
    PLoS ONE, 2013. 8(6): p. e67243
    [PMID:23840638]
  2. Lei HJ, et al.
    Identification and characterization of FaSOC1, a homolog of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 from strawberry.
    Gene, 2013. 531(2): p. 158-67
    [PMID:24055423]
  3. Wells CE,Vendramin E,Jimenez Tarodo S,Verde I,Bielenberg DG
    A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch].
    BMC Plant Biol., 2015. 15: p. 41
    [PMID:25848674]
  4. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]
  5. Sun LM,Zhang JZ,Hu CG
    Characterization and Expression Analysis of PtAGL24, a SHORT VEGETATIVE PHASE/AGAMOUS-LIKE 24 (SVP/AGL24)-Type MADS-Box Gene from Trifoliate Orange (Poncirus trifoliata L. Raf.).
    Front Plant Sci, 2016. 7: p. 823
    [PMID:27375669]