PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019278.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 512aa MW: 55218.1 Da PI: 5.8869

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019278.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	148	208	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Pbr019278.1 148 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 208 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-31	141	205	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	150	206	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	152	206	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	154	190	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MSEAAKDPAI KLFGKTIPVL SSDGDSVGVA GGPEPYPPSG TVAEETVDQD RAASSSNSSP 60 EVNTQREREE KEVNDNKDTL GEKPIQAKQE NGITTLSSEE LTNPDAASII GVNPESPVQK 120 ENATLKTEKT EEEQSETSNA QDKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK 180 NCQRYWTAGG TMRNVPVGAG RRKNKNSASH YRHITVSEAV PNAQADVLNG VHHPSVKPNG 240 TVLTFCGDMP LCESMASVLH LADKNIQNCT RNGFQKPGGL RIPASYGGGV NGDDHLTGSM 300 VTDSNSKDEA CKSGSQEQVL QNYQGFPPQV PCFPGAPWPY PWNSSQWSSP VTPPAFCPPG 360 YPMPFYPAAA YWGCAVQGPW NIPWLPPPSS LNNSAPSSGP NSPTLGKHSR EENTMKQNSS 420 EEEEPTKEKS AEKNLWIPKT LRIDDPGEAA KSSIWATLGI KNDKADSVSS GGLFKAFQSK 480 GDQKNHPSDA SPVLQANPAA LSRSLNFQES S*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MSEAAKDPAI KLFGKTIPVL SSDGDSVGVA GGPEPYPPSG TVAEETVDQD RAASSSNSSP  60
EVNTQREREE KEVNDNKDTL GEKPIQAKQE NGITTLSSEE LTNPDAASII GVNPESPVQK  120
ENATLKTEKT EEEQSETSNA QDKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK  180
NCQRYWTAGG TMRNVPVGAG RRKNKNSASH YRHITVSEAV PNAQADVLNG VHHPSVKPNG  240
TVLTFCGDMP LCESMASVLH LADKNIQNCT RNGFQKPGGL RIPASYGGGV NGDDHLTGSM  300
VTDSNSKDEA CKSGSQEQVL QNYQGFPPQV PCFPGAPWPY PWNSSQWSSP VTPPAFCPPG  360
YPMPFYPAAA YWGCAVQGPW NIPWLPPPSS LNNSAPSSGP NSPTLGKHSR EENTMKQNSS  420
EEEEPTKEKS AEKNLWIPKT LRIDDPGEAA KSSIWATLGI KNDKADSVSS GGLFKAFQSK  480
GDQKNHPSDA SPVLQANPAA LSRSLNFQES S*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019278.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376278.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A498J6Y9	0.0	A0A498J6Y9_MALDO; Uncharacterized protein
STRING	XP_009376278.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-89	cycling DOF factor 3