PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019264.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 376aa MW: 41810.1 Da PI: 8.5094 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 40.1 | 8.6e-13 | 112 | 135 | 36 | 59 |
ZF-HD_dimer 36 gtaaalkCaACgCHRnFHRrevee 59 ++++lkCaACgCHRnFHRr++e+ Pbr019264.1 112 XDPTSLKCAACGCHRNFHRRDPED 135 5799****************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 10.707 | 66 | 132 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-6 | 113 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.4E-9 | 113 | 133 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 7.17E-16 | 236 | 296 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.0E-24 | 237 | 292 | IPR006455 | Homeodomain, ZF-HD class |
Gene3D | G3DSA:1.10.10.60 | 2.9E-26 | 237 | 296 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MDITPSITTT TNNTASTKSP EADSETPTRI RQPLKPPSSN GVLKRHNPTH HLHHHNIPIT 60 PVVVTYKECL KNXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDPTSLKCA 120 ACGCHRNFHR RDPEDPVQPN TPATTTHVIE YQPHHRHHPP PPTHPGNRSP SSASPPPISS 180 SYYPSAPHML LALSTAHENA LAGANNNNAV AMPQIVSPSP NARKRFKTKF TQXXXXRFRT 240 KFTQDQKEKM YQFAERVGWK MQKRDEEIVQ EFCNEAGIEK GVLKVWMHNN KNTFSKRDVL 300 NGGAGGRAGS LSRPSSFLLE HSHHHNNGTN GNGNNNDDDE EEDDDQNDNK NGVPNPNHHY 360 QGADGGGNNG SSSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 237 | 293 | 19 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019264.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376317.1 | 1e-143 | PREDICTED: zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A498J1T7 | 1e-137 | A0A498J1T7_MALDO; Uncharacterized protein | ||||
STRING | XP_009376317.1 | 1e-142 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 6e-44 | homeobox protein 34 |