PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019244.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 311aa    MW: 32494.5 Da    PI: 9.0671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019244.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-065174225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++G++C+F H
  Pbr019244.1 51 KSKPCTKFFSTAGCPFGESCHFLH 74
                 7789******************** PP
2zf-CCCH22.71.8e-07115140227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  k ++C+ +     Ck+Gd+C+FaHg+
  Pbr019244.1 115 KSRICNKYNSAEGCKFGDKCHFAHGE 140
                  5689999999999***********96 PP
3zf-CCCH34.82.8e-11277301126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC++f + GtC +G+rC+FaHg
  Pbr019244.1 277 FKTKLCDNFTK-GTCTFGERCHFAHG 301
                  69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7094977IPR000571Zinc finger, CCCH-type
SMARTSM003560.914976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-85174IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-45174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-13110145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028113141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7114144IPR000571Zinc finger, CCCH-type
SMARTSM003560.016115140IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.04E-16173252IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-17180252IPR004088K Homology domain, type 1
SMARTSM003221.0E-12181251IPR004087K Homology domain
PROSITE profilePS5008414.718182246IPR004088K Homology domain, type 1
PfamPF000133.3E-12184248IPR004088K Homology domain, type 1
CDDcd001051.74E-15184246No hitNo description
Gene3DG3DSA:4.10.1000.104.0E-16272307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117276303IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7276302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8276306IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-9277301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDTRKRGRHE GGGFHSNGGF KKNKQGSLFA FSHSVSCEFE LESFSTGVGS KSKPCTKFFS  60
TAGCPFGESC HFLHYVPGGY NAVAQMMNLA PAPPPPRNIP GPPSHSNGSN SSGVKSRICN  120
KYNSAEGCKF GDKCHFAHGE WELGKPLAQS HDDPHAMGPG PGRMGNWMEP HPARPASSFG  180
ASSTAKISVD ASLAGAIIGK GGVHSKQICR QTGAKLSIRD HESNPNLRNI ELEGTFEQIQ  240
QASAMVSELI ATVSISGPGK APGGGGPGAP APPGSNFKTK LCDNFTKGTC TFGERCHFAH  300
GAAELRKSGV *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367363.20.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498I3E10.0A0A498I3E1_MALDO; Uncharacterized protein
STRINGXP_008367363.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-88C3H family protein