PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019236.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 428aa    MW: 48137.6 Da    PI: 8.0321
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019236.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-30251305155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rW+++LHe+Fve+v++LGG+ekAtPk+il++m ++gLt+ hvkSHLQkYR+
  Pbr019236.1 251 KTRIRWNQDLHEKFVECVNRLGGAEKATPKAILKMMCLDGLTIFHVKSHLQKYRI 305
                  68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-16249305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-26249306IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-22251306IPR006447Myb domain, plants
PfamPF002499.4E-8255304IPR001005SANT/Myb domain
PfamPF143793.5E-17336381IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNEKKIDCQE RNQQSHELIS ECNFEVGNQS YQIFGERQQQ AWNNMGIWVQ QPTMDHGVSL  60
LQNLGPPKSP SSITSRLESP ASAFYATERC MGGFPQYDSQ VGNNPHFPSG QSYNESYSSM  120
NSSEQTDLDF DIRNTLQSIV KTQPRSYQYH KSSEKFNQIP GSDLSGCKLF AHQSNKLHGD  180
HKTTTIRRPS LSLPSKENQD QVGCYTSFNT SPVTQPSFFS QQGKQSPRYS SGNVSAAYGN  240
SPSTSPVLSS KTRIRWNQDL HEKFVECVNR LGGAEKATPK AILKMMCLDG LTIFHVKSHL  300
QKYRIAKYLP YPAEGKSEKR TTLNFEPHLV VKTGLQIKEA LQLQLDDQRR LHEQLEIQRK  360
LQLRIEEQGK QLKEMFDLQQ QASSSLLKTQ NVDVTCHEAG PSNSLDDTDQ VSTSEGSANT  420
SFHSKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-22251308259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019236.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507314.10.0PREDICTED: transcription repressor KAN1-like isoform X1
RefseqXP_018507315.10.0PREDICTED: transcription repressor KAN1-like isoform X1
TrEMBLA0A498I6490.0A0A498I649_MALDO; Uncharacterized protein
STRINGXP_009376116.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-61G2-like family protein