PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019232.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 395aa    MW: 42355 Da    PI: 9.8371
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019232.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP113.31.4e-3580170178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.............EEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.............fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsr             fh l efD++krsCrrrLa+hnerrrk+q+
  Pbr019232.1  80 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRgtpiarftvstfkFHLLPEFDQGKRSCRRRLAGHNERRRKPQP 170
                  6**********************************************666666666666669**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3174155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.41978168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-3579173IPR004333Transcription factor, SBP-box
PfamPF031102.9E-2081135IPR004333Transcription factor, SBP-box
PfamPF031104.8E-8133167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGSSSMTESG SSSSSSPPNS SAESLNGLKF GQTIYFEDVG FGAQHKSSSG SAAGSSSAGA  60
TPPKKQRGGG NMGQLGQPPR CQVEGCQVDL SDAKAYYSRH KVCGLHSKTP TVIVAGLEQR  120
FCQQCSRGTP IARFTVSTFK FHLLPEFDQG KRSCRRRLAG HNERRRKPQP GSILSTRFGR  180
LSSSLYENSN RVGSFLMDFT AYPRVSGRDA WTTTRTSERA PVVQNANDAG KFLQQPWHSN  240
SGITTSGFYM QGSASGTNYP GPGIPPGECI TVVTDSSCAL SLLSNQPWGS RNRVSGVGMN  300
SLMNTQGIPV AQPTPHVATS NHFPTTLWGF KGNENGSSSH EMLPDLGLGQ ISQPLSSQYS  360
GVLELSQQGR RQQHMELGHT RGYDSTSQQM NWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-27811671184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0774420.0KM077442.1 Pyrus x bretschneideri squamosa promoter binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349184.10.0PREDICTED: squamosa promoter-binding-like protein 14
RefseqXP_009376108.10.0PREDICTED: squamosa promoter-binding-like protein 14
TrEMBLA0A097DCU00.0A0A097DCU0_9ROSA; Squamosa promoter binding protein
STRINGXP_009349184.10.0(Pyrus x bretschneideri)
STRINGXP_009376108.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-64squamosa promoter binding protein-like 9