PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019220.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 362aa MW: 40039.3 Da PI: 9.5818

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019220.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.2	1.4e-20	55	146	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +re++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a Pbr019220.2 55 CWSHDETVALIDSYREKWYSLRRGNLKATHWQDVADAIaricPAASPAKTAVQCRHKMEKLRKRYRTEIQRARSMpLSRFTSSWVHFKRMDA 146 8*****************************99999876667788899*********************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-20	54	147	No hit	No description
SMART	SM00595	6.9E-12	63	152	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MASPPSSPQD DSILPLQSEP PQGVPLALPA PPLSQSQQTQ PNPTPPSSRR LPPPCWSHDE 60 TVALIDSYRE KWYSLRRGNL KATHWQDVAD AIARICPAAS PAKTAVQCRH KMEKLRKRYR 120 TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SLGEEEDNEE NEEEEDPDQE 180 LYEELRYGSN MKSMSKLYRN GAGVGGGSGG SGGGGGPGSG FRIRIPTGVS IAQPGTKVYP 240 KMDQKFGMNS NPGSGYGSAK VMRESGNSGR PGLGKRERDG RERERDPVAE MVSAIKLLGD 300 GFVRMEQMKM EMAREIETMR MDMEVKRTEM ILESQQRIVE AFAKAVSEKK KKAKRMPSPE 360 A*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MASPPSSPQD DSILPLQSEP PQGVPLALPA PPLSQSQQTQ PNPTPPSSRR LPPPCWSHDE  60
TVALIDSYRE KWYSLRRGNL KATHWQDVAD AIARICPAAS PAKTAVQCRH KMEKLRKRYR  120
TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SLGEEEDNEE NEEEEDPDQE  180
LYEELRYGSN MKSMSKLYRN GAGVGGGSGG SGGGGGPGSG FRIRIPTGVS IAQPGTKVYP  240
KMDQKFGMNS NPGSGYGSAK VMRESGNSGR PGLGKRERDG RERERDPVAE MVSAIKLLGD  300
GFVRMEQMKM EMAREIETMR MDMEVKRTEM ILESQQRIVE AFAKAVSEKK KKAKRMPSPE  360
A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019220.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376099.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A498JES2	0.0	A0A498JES2_MALDO; Uncharacterized protein
STRING	XP_009376099.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-75	Trihelix family protein