PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019198.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 495aa    MW: 55796 Da    PI: 10.011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019198.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79e-18254346499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  v++ps+    + ++l  kf++eh +k +++ +++l  ++gr+W vkl  +++++++ l+++W +Fv++n+L+ gD++vF l+++ ++  + v +fr+
  Pbr019198.1 254 VMSPSY-IHAHYVYLVAKFTKEHFLKWNCH-QVILCVSDGRTWPVKL-SKRQKNMVRLQNCWISFVQDNHLEIGDVCVFALINNiEGL-MDVVIFRT 346
                  444555.55556***********8886665.9999************.5888889***************************995555.88888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-967133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-789132No hitNo description
Gene3DG3DSA:2.40.330.102.9E-892133IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.72795134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-21243345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-20244345IPR015300DNA-binding pseudobarrel domain
CDDcd100176.40E-20249345No hitNo description
PROSITE profilePS5086311.491250347IPR003340B3 DNA binding domain
SMARTSM010194.9E-11251347IPR003340B3 DNA binding domain
PfamPF023625.3E-16252345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MTSSTPLSCP RPHKKHRTSS TAEFASKKHG EGTSSTPKRA QTVLGRMHAS NARGKADVAL  60
RRATAFKSDN PSFIVPMKRT YINGHSVATR PKLRLQYGWT EFLRGNNLEV GDVCVLVLID  120
DTKLVFEVVI FRTTETAHTF SPPDVDGEQT MSQMEETNED KDSIEVLDDF PTCPKTKKKS  180
PIAPQPHKKN RTCSVSTAEN RIKKIGGSSL TKKIMNRRTL QVLRKMNPVM AHGTNRALQR  240
AKAFKSEYPS CTVVMSPSYI HAHYVYLVAK FTKEHFLKWN CHQVILCVSD GRTWPVKLSK  300
RQKNMVRLQN CWISFVQDNH LEIGDVCVFA LINNIEGLMD VVIFRTIEAA RCNLSQDVDG  360
EKTMSQTEET DEDDDRVEIL DDSPPCLKTK KNPPIATQPH KKNRAGSIST SENHMKKFGG  420
SSWTKELVKR RSDQVPRMMN PLMESGTNRA LQRARAFKSE YLCCTVVMHP SYIQANTLVS  480
FLERQIMSTS ASMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019198.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507297.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620400-like
TrEMBLA0A498HHW40.0A0A498HHW4_MALDO; Uncharacterized protein
STRINGXP_009376053.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-10related to vernalization1 1