PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018979.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TALE

Protein Properties

Length: 807aa MW: 88388.2 Da PI: 7.4446

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018979.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	623	660	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Pbr018979.1 623 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 660 564459******************************87 PP
2	BELL	98.5	5.5e-32	472	540	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+kkakLl ++eeV +r kqy++q+q+v++sFe vagl sa+pY+ +Al+a+SrhFrcL + i++q+ Pbr018979.1 472 EYQQKKAKLLYMQEEVSRRCKQYHQQMQMVVASFESVAGLSSATPYICMALNAVSRHFRCLTNSIKDQL 540 789***************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.4E-37	371	538	IPR006563	POX domain
Pfam	PF07526	2.8E-40	376	536	IPR006563	POX domain
PROSITE profile	PS50071	11.888	601	664	IPR001356	Homeobox domain
CDD	cd00086	7.60E-11	604	665	No hit	No description
SMART	SM00389	1.2E-7	604	668	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-16	606	669	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-27	607	668	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	621	660	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MEMSGFRHES HVAQQSRRDK LRVHQTSSPP HHLDNLANNS GKLPLHPGLN PHIVQVRNVR 60 NANLLYDPTM FSSEMLDFSI NANAPLSAHR ITMACHDQDL GAAQPAGESQ NFGNWRSTLN 120 PPQSLDWVNN YTSGYQDVVQ SSLANSSADQ ISSHRVAQKH LGGGAMHFSS PSLKYVNTLQ 180 DVVTSASQGT QQDQLEMASI VHQRIMENEF VRVPSYGNQS NTLRFNNASN SWMDRQSIEN 240 RHNWSSGGGG GLEFSTANSV DEEMRTGMSS DSNQQGLSLS LSSNPPSNKL PVAQLIGSQD 300 LHASTDDDDD DHHHALKDLQ NSKMGKSSGG YLCSITKPSI ISKACGKSHQ DIVGNSSTSA 360 YRSTGPLGPF TGYATILKSS KFLKPAQQLL DEFCRVSDSK ILKTCEASER MSGDVSASAS 420 VSISIEAGNA TETEVVAKRN NSGASSSTFY GSTEISSDGG AASISSESFW PEYQQKKAKL 480 LYMQEEVSRR CKQYHQQMQM VVASFESVAG LSSATPYICM ALNAVSRHFR CLTNSIKDQL 540 KHTRKALGEE YMSSSVTAAG TAGCCSKGEK NFAKLKYMGL GFQKHNKSGG GSLVGFSEPQ 600 QHVWRPQRGL PERSVAILRT WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR 660 VWKPMVEEIH ILETRGGSLE TGQDPINKDG NSANEGTSSR PNNDHQLSMN VMPDRQLKCL 720 GDAEQRNQDM KRSRLECQVS SSMDGGLMGF VQDQRGGFEA GGLGAVSLTL GLRHGVESAQ 780 QQQQLQQQED QLRRQLGGQM IRDYVG*

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MEMSGFRHES HVAQQSRRDK LRVHQTSSPP HHLDNLANNS GKLPLHPGLN PHIVQVRNVR  60
NANLLYDPTM FSSEMLDFSI NANAPLSAHR ITMACHDQDL GAAQPAGESQ NFGNWRSTLN  120
PPQSLDWVNN YTSGYQDVVQ SSLANSSADQ ISSHRVAQKH LGGGAMHFSS PSLKYVNTLQ  180
DVVTSASQGT QQDQLEMASI VHQRIMENEF VRVPSYGNQS NTLRFNNASN SWMDRQSIEN  240
RHNWSSGGGG GLEFSTANSV DEEMRTGMSS DSNQQGLSLS LSSNPPSNKL PVAQLIGSQD  300
LHASTDDDDD DHHHALKDLQ NSKMGKSSGG YLCSITKPSI ISKACGKSHQ DIVGNSSTSA  360
YRSTGPLGPF TGYATILKSS KFLKPAQQLL DEFCRVSDSK ILKTCEASER MSGDVSASAS  420
VSISIEAGNA TETEVVAKRN NSGASSSTFY GSTEISSDGG AASISSESFW PEYQQKKAKL  480
LYMQEEVSRR CKQYHQQMQM VVASFESVAG LSSATPYICM ALNAVSRHFR CLTNSIKDQL  540
KHTRKALGEE YMSSSVTAAG TAGCCSKGEK NFAKLKYMGL GFQKHNKSGG GSLVGFSEPQ  600
QHVWRPQRGL PERSVAILRT WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR  660
VWKPMVEEIH ILETRGGSLE TGQDPINKDG NSANEGTSSR PNNDHQLSMN VMPDRQLKCL  720
GDAEQRNQDM KRSRLECQVS SSMDGGLMGF VQDQRGGFEA GGLGAVSLTL GLRHGVESAQ  780
QQQQLQQQED QLRRQLGGQM IRDYVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	4e-15	610	667	1	58	Homeobox protein Meis1
4xrs_B	4e-15	610	667	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018979.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376059.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Refseq	XP_009376060.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
TrEMBL	A0A498KB13	0.0	A0A498KB13_MALDO; Uncharacterized protein
STRING	XP_009376059.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009376060.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3481	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	5e-85	BEL1-like homeodomain 8