PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018924.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 677aa MW: 76990.5 Da PI: 5.3765

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018924.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.7	7e-109	307	674	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + L++cA+av+s d ++a++lL++++ ++sp+gd +qRla+y++ +L+ rl + + y++lp s+ s ++ l+a++++ ++P++k+s++ aN+ Pbr018924.1 307 SMLTQCAQAVASYDRRNANELLQQIRLNSSPYGDGTQRLAHYLADGLELRLGS-GVPSYNSLPNSQMS---AADLLKAYQTYIRACPFHKMSNFYANK 400 689**********************************************99.66777888888888...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +Il+ +e+++r+HiiDf++ +G QWp+L++ L++R +gpp+lRiTgv+ p++g +e++e+tg+rL++++++++v+fe+++ +ak++e++++e++++ Pbr018924.1 401 TILKLAEKATRLHIIDFGVLYGYQWPCLIKGLSKRHGGPPMLRITGVEFPQPGfrPSERVEQTGRRLENYCKRFNVQFEYTA-IAKNWETIRYEDIKI 497 ************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 + +E ++Vn+ ++l++l+de+v+ rd+vLkl+++++P+++++ + ++n++ F +rf eal ++s+lfd+++++lpre+++r +Ere+ gr++ Pbr018924.1 498 DGDELTVVNCLYRLKNLPDETVTDCP-RDTVLKLIREINPDIFIHGVVNGSYNAPFFDTRFKEALFHFSSLFDMFDETLPREDQHRLLYEREVYGRNA 594 **************99998887.******************************************************************* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg++r+er et+++W+ r ++aGF+++p ++++ k +++++++ + + + v+e+ ++++gWk+r + ++S W+ Pbr018924.1 595 INVIACEGSRRVERPETYKQWQIRNKRAGFRQLPSDQEILKLVRSMVKRDYHKDFIVDEDGMWVLQGWKGRIVHAISYWK 674 *********************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.264	279	654	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-106	307	674	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MDTFLDELPS PMKKFVFEQA PIPAYSNPNL VHEFEANHDF TDPSFFLVNP DPVSDSSSSP 60 GVSSEVDSPD SGDTSNEILR YISQMLMEEE EYLENKPCML HECLALQAAE KSLHDVLVQE 120 QNPFSTDPLV DSVYRYVESP NQGSNHSSSG SVAAGNWVGS DWDWVQDVSK SSPAQIPNPL 180 VSSGDGEIAH LEHNSSFVMA PRELLGKDVS FNSENGSRSK KNRQREDEDS VDDGRSNKLS 240 AVYADEIELP ELLDKVLLCE IDKQESNSCS PQESEKLQLN GKSRGSKGKK TRKKKPDDNA 300 GMVDLWSMLT QCAQAVASYD RRNANELLQQ IRLNSSPYGD GTQRLAHYLA DGLELRLGSG 360 VPSYNSLPNS QMSAADLLKA YQTYIRACPF HKMSNFYANK TILKLAEKAT RLHIIDFGVL 420 YGYQWPCLIK GLSKRHGGPP MLRITGVEFP QPGFRPSERV EQTGRRLENY CKRFNVQFEY 480 TAIAKNWETI RYEDIKIDGD ELTVVNCLYR LKNLPDETVT DCPRDTVLKL IREINPDIFI 540 HGVVNGSYNA PFFDTRFKEA LFHFSSLFDM FDETLPREDQ HRLLYEREVY GRNAINVIAC 600 EGSRRVERPE TYKQWQIRNK RAGFRQLPSD QEILKLVRSM VKRDYHKDFI VDEDGMWVLQ 660 GWKGRIVHAI SYWKPV*

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MDTFLDELPS PMKKFVFEQA PIPAYSNPNL VHEFEANHDF TDPSFFLVNP DPVSDSSSSP  60
GVSSEVDSPD SGDTSNEILR YISQMLMEEE EYLENKPCML HECLALQAAE KSLHDVLVQE  120
QNPFSTDPLV DSVYRYVESP NQGSNHSSSG SVAAGNWVGS DWDWVQDVSK SSPAQIPNPL  180
VSSGDGEIAH LEHNSSFVMA PRELLGKDVS FNSENGSRSK KNRQREDEDS VDDGRSNKLS  240
AVYADEIELP ELLDKVLLCE IDKQESNSCS PQESEKLQLN GKSRGSKGKK TRKKKPDDNA  300
GMVDLWSMLT QCAQAVASYD RRNANELLQQ IRLNSSPYGD GTQRLAHYLA DGLELRLGSG  360
VPSYNSLPNS QMSAADLLKA YQTYIRACPF HKMSNFYANK TILKLAEKAT RLHIIDFGVL  420
YGYQWPCLIK GLSKRHGGPP MLRITGVEFP QPGFRPSERV EQTGRRLENY CKRFNVQFEY  480
TAIAKNWETI RYEDIKIDGD ELTVVNCLYR LKNLPDETVT DCPRDTVLKL IREINPDIFI  540
HGVVNGSYNA PFFDTRFKEA LFHFSSLFDM FDETLPREDQ HRLLYEREVY GRNAINVIAC  600
EGSRRVERPE TYKQWQIRNK RAGFRQLPSD QEILKLVRSM VKRDYHKDFI VDEDGMWVLQ  660
GWKGRIVHAI SYWKPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-46	309	674	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018924.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375910.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	M5W391	0.0	M5W391_PRUPE; Uncharacterized protein
STRING	XP_009375910.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-174	GRAS family protein