PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018922.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 662aa MW: 75076.9 Da PI: 7.03

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018922.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.9	2.6e-115	289	657	3	372
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + L++cA+av+s d++ a++l+++++++ sp g++++Rla yf++AL+arla+s + y+ l + +t+ +e l+a++++ +P+ k+ ++ aN+ Pbr018922.1 289 TMLTQCAQAVASYDQRTASELIKKIRQHTSPCGEATERLAYYFANALEARLAGSRTPSYSPLLSPQTP---ATEILKAHQVYITSCPFTKMLYFFANR 383 689************************************************999999999777777...89********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I++ +e+++r+HiiDf+is+G+QWp+L+q L++R +gpp+lRiT+++ p++g +e++eet +rL+k+A+++ vpfe+nv +a+++e++++e+L+v Pbr018922.1 384 TIMKLAENATRLHIIDFGISYGFQWPCLIQRLSERCGGPPNLRITAIELPQPGfrPTERVEETMRRLEKYAKRFVVPFEYNV-IAQKWETIRFEDLKV 480 ************************************************9************************9.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++ E ++Vn++ +l +++de+v ++s+rd+vL+l+k+++P+++ + + +ns+ F++rf eal +ys+lfd++ea++pre+e+r + E ++ gr+i Pbr018922.1 481 DRSELTVVNCMRRLRHIPDETVVMSSPRDTVLNLIKKINPDLFLHGLVNGTYNSPFFVKRFREALFHYSSLFDMFEATIPREDEHRLMFEGAIYGRDI 578 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 +nvvaceg er+er et+++W+ r ++aGFk+vpl+++ + ++k++l+ + d +r+ e+ +++++gWk+r +++++a Pbr018922.1 579 MNVVACEGLERVERPETYKHWQVRYQRAGFKQVPLDQELMRKVKAMLKLMRyHDDFRIYEDGHWMLQGWKGRIVMALCA 657 ********************************************9999999******************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.067	261	638	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-113	289	657	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MERFTVGHGS NQNLGNHGST NPIFLPTNLD HNPSDSRSSQ IPVNGFQVNH EPTNTLFLPP 60 NPDHPSESGF SSSGSDGDTF DISVCNHPVL KYISDILLEE DLEGKPCMLQ DCLALQAAEK 120 SFYDVLNPKG RSSSQSPLPV DRSFENSDDD FTECCHSSIG CVAARTDSVS GSETSHVQSC 180 PVESSSDAYN STYRLKSKKN HLREDGDYTE EGRSNKQSAA SADGPEPQEM FDEVLLYKDA 240 RHAFESCSDD QSVKTDGSGK LKCNKQPKVS KAARSKTKNK NRELVDLCTM LTQCAQAVAS 300 YDQRTASELI KKIRQHTSPC GEATERLAYY FANALEARLA GSRTPSYSPL LSPQTPATEI 360 LKAHQVYITS CPFTKMLYFF ANRTIMKLAE NATRLHIIDF GISYGFQWPC LIQRLSERCG 420 GPPNLRITAI ELPQPGFRPT ERVEETMRRL EKYAKRFVVP FEYNVIAQKW ETIRFEDLKV 480 DRSELTVVNC MRRLRHIPDE TVVMSSPRDT VLNLIKKINP DLFLHGLVNG TYNSPFFVKR 540 FREALFHYSS LFDMFEATIP REDEHRLMFE GAIYGRDIMN VVACEGLERV ERPETYKHWQ 600 VRYQRAGFKQ VPLDQELMRK VKAMLKLMRY HDDFRIYEDG HWMLQGWKGR IVMALCALKP 660 A*

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MERFTVGHGS NQNLGNHGST NPIFLPTNLD HNPSDSRSSQ IPVNGFQVNH EPTNTLFLPP  60
NPDHPSESGF SSSGSDGDTF DISVCNHPVL KYISDILLEE DLEGKPCMLQ DCLALQAAEK  120
SFYDVLNPKG RSSSQSPLPV DRSFENSDDD FTECCHSSIG CVAARTDSVS GSETSHVQSC  180
PVESSSDAYN STYRLKSKKN HLREDGDYTE EGRSNKQSAA SADGPEPQEM FDEVLLYKDA  240
RHAFESCSDD QSVKTDGSGK LKCNKQPKVS KAARSKTKNK NRELVDLCTM LTQCAQAVAS  300
YDQRTASELI KKIRQHTSPC GEATERLAYY FANALEARLA GSRTPSYSPL LSPQTPATEI  360
LKAHQVYITS CPFTKMLYFF ANRTIMKLAE NATRLHIIDF GISYGFQWPC LIQRLSERCG  420
GPPNLRITAI ELPQPGFRPT ERVEETMRRL EKYAKRFVVP FEYNVIAQKW ETIRFEDLKV  480
DRSELTVVNC MRRLRHIPDE TVVMSSPRDT VLNLIKKINP DLFLHGLVNG TYNSPFFVKR  540
FREALFHYSS LFDMFEATIP REDEHRLMFE GAIYGRDIMN VVACEGLERV ERPETYKHWQ  600
VRYQRAGFKQ VPLDQELMRK VKAMLKLMRY HDDFRIYEDG HWMLQGWKGR IVMALCALKP  660
A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-44	276	660	7	379	Protein SCARECROW
5b3h_D	7e-44	276	660	7	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018922.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375905.1	0.0	PREDICTED: scarecrow-like protein 30
Refseq	XP_009375906.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	D9ZJB1	0.0	D9ZJB1_MALDO; SCL domain class transcription factor
STRING	XP_009375905.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-172	GRAS family protein