PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018921.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 713aa MW: 80018.1 Da PI: 5.959

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018921.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365	1.1e-111	339	706	2	370
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL+ecAeav+s ++++a++lL+r+++++sp+gd++qRla+yf+ +L+arla+ ++ ++ l + ++e l+a+++++ ++P+ k+ h+ a Pbr018921.1 339 CKLLTECAEAVASYNQQAANELLKRIRQHSSPYGDSTQRLAHYFADGLEARLAGaRNPSYCRPLMMHIP----ETEILKAYQVYVTACPFKKMVHFFA 432 589*************************************************444444444444333....799****************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ +e+++r+HiiDf+is GlQWp+L+q+L+++++gpp+l iT ++ p++g +e +eetg+rL+k++e+ +vpfe+nv +ak++e+++le++ Pbr018921.1 433 NRTIMKTAEKATRLHIIDFGISFGLQWPCLIQSLSEKTGGPPKLCITLIEVPQPGfrPAEIIEETGRRLTKYCEKYNVPFEYNV-IAKKWETIRLEDI 529 ***************************************************999***********************9.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 r++++E+++Vn++++l++++de+v +++rd++L+l+k+++P+++ + + +n++ F++rf +al ++ a+fd +ea++pre+e+r+ Er+++gr Pbr018921.1 530 RIDRNEVTVVNCMFRLKQIPDETVMANNPRDAILNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQALFHFHAFFDIYEATVPREDEQRMLFERAVFGR 627 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370 +i+nvvaceg+er+er et+++W++r + GFk++pl+ +++k+l + ++ + +e++ +++++gWk+r ++++ Pbr018921.1 628 DIMNVVACEGQERVERPETYKQWQARYARIGFKQLPLDRALLQKVKTLSKVMGyHSDFLIEDDGQWMLQGWKGRIVLAL 706 ********************************************999988888***************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.122	312	689	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-109	339	706	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MDTLYVERFS APIEGFELGD GSNSVCCDEN LAGGFKENHE STNPNSLPSN FDHPSVSSTS 60 LSAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACMLQ QSLALKMAEN SFHDALNSEN 120 PPLLNQPSFS VYQSFEDSDV GFHSSDGSVA SFYSSNGSIS ANSGCVWDVS QPCHVQSSLF 180 EPISDTLFVS DSFSVEEGIK FVPKQSCEII DPERDQLMPS GSDQWPRGPC TLIGDLASKN 240 GYNSTNGSKG KKNHRREDGY DTEEGRRNKQ SAAACDSSDL QEIYDKVLQS VNHEPDSCSH 300 DESSKTKGNR TLQHKEQSKG SKTSRAKKQN SNGKVVDLCK LLTECAEAVA SYNQQAANEL 360 LKRIRQHSSP YGDSTQRLAH YFADGLEARL AGARNPSYCR PLMMHIPETE ILKAYQVYVT 420 ACPFKKMVHF FANRTIMKTA EKATRLHIID FGISFGLQWP CLIQSLSEKT GGPPKLCITL 480 IEVPQPGFRP AEIIEETGRR LTKYCEKYNV PFEYNVIAKK WETIRLEDIR IDRNEVTVVN 540 CMFRLKQIPD ETVMANNPRD AILNLIKRIN PDLFMHGVVN GTYNAPAFVT RFKQALFHFH 600 AFFDIYEATV PREDEQRMLF ERAVFGRDIM NVVACEGQER VERPETYKQW QARYARIGFK 660 QLPLDRALLQ KVKTLSKVMG YHSDFLIEDD GQWMLQGWKG RIVLALNALK PA*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MDTLYVERFS APIEGFELGD GSNSVCCDEN LAGGFKENHE STNPNSLPSN FDHPSVSSTS  60
LSAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACMLQ QSLALKMAEN SFHDALNSEN  120
PPLLNQPSFS VYQSFEDSDV GFHSSDGSVA SFYSSNGSIS ANSGCVWDVS QPCHVQSSLF  180
EPISDTLFVS DSFSVEEGIK FVPKQSCEII DPERDQLMPS GSDQWPRGPC TLIGDLASKN  240
GYNSTNGSKG KKNHRREDGY DTEEGRRNKQ SAAACDSSDL QEIYDKVLQS VNHEPDSCSH  300
DESSKTKGNR TLQHKEQSKG SKTSRAKKQN SNGKVVDLCK LLTECAEAVA SYNQQAANEL  360
LKRIRQHSSP YGDSTQRLAH YFADGLEARL AGARNPSYCR PLMMHIPETE ILKAYQVYVT  420
ACPFKKMVHF FANRTIMKTA EKATRLHIID FGISFGLQWP CLIQSLSEKT GGPPKLCITL  480
IEVPQPGFRP AEIIEETGRR LTKYCEKYNV PFEYNVIAKK WETIRLEDIR IDRNEVTVVN  540
CMFRLKQIPD ETVMANNPRD AILNLIKRIN PDLFMHGVVN GTYNAPAFVT RFKQALFHFH  600
AFFDIYEATV PREDEQRMLF ERAVFGRDIM NVVACEGQER VERPETYKQW QARYARIGFK  660
QLPLDRALLQ KVKTLSKVMG YHSDFLIEDD GQWMLQGWKG RIVLALNALK PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-47	320	711	1	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018921.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375907.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_009375907.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-174	SCARECROW-like 14