PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018920.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 693aa MW: 78268 Da PI: 6.6194

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018920.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	384	1.7e-117	320	689	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+av++ d++ a++lL+++++++sp gd++qRla+yf+ +L+arla+ ++ +y+ l ++ts +++ l+a+++f sP+ +s+++a Pbr018920.1 320 LRTLLTQCAQAVANYDQRTASELLQKIRHHSSPCGDANQRLAHYFADGLEARLAGATTPTYSFLVGTQTS---TADILKAYQVFISSSPFKLMSNFMA 414 6789**********************************************************999999...8******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ e+++r+H+iDf+is+G+QWp+++q L++R++gpp+lRiT+++ p++g +e++eet++rL+k+Ae+++vpfe nv +a+++e++++e+L Pbr018920.1 415 NRTIMKLSENATRLHVIDFGISYGFQWPCFIQHLSERTGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIKFEDL 511 **************************************************9************************9.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 r+++ E ++Vn++ +l++++de+v +s+rd vLkl+k+++P+v+++ + +n++ F++rf eal++ysa+fd lea++pre+e r+ E+++ gr Pbr018920.1 512 RIDRSELTVVNCMCRLKHIPDETVMASSPRDIVLKLIKKINPDVFIHGVVNGTYNAPFFATRFREALYHYSAFFDILEATVPREDEMRRLFEKAIYGR 609 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ivnvvaceg er+er et+++W+ r +aGFk++pl++ k +k++l+ +++d +r++e+ +++++ W++r+++++S+W Pbr018920.1 610 DIVNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQALLKRVKRMLKSYHDD-FRIDEDGNWMLQSWRGRTILALSVW 689 *************************************************66.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.268	294	671	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-115	320	689	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MDTLLERYDV SVERLNFGSV YPHQNLVNGF KVNHESTNSI FPPTNLDHNS SDSSTYSSTG 60 SDGDSIDPND FNHPMLKYIS DILLEEDLEG KPCMMQGCLA LQAAEKSFFD VLNPKGPPSP 120 NQPPLSHSLE NSDDDSTPSF HSGNGSSIAA KTDWGFDSSE TSHFQSSLVE SQSDNLLVSD 180 LLSELQSSGH FGGVGEASKF LPNGSFGTFD QERNHLMHPG PDLRPPGTRT LVRRPENYGY 240 NSTNILKGKK NHQREDVDYP EEGRSSKLPV AFADDSEPPQ EMFDEVLLCH GHHRLGNKQA 300 KGAKTTRSKK QNNNTEMVDL RTLLTQCAQA VANYDQRTAS ELLQKIRHHS SPCGDANQRL 360 AHYFADGLEA RLAGATTPTY SFLVGTQTST ADILKAYQVF ISSSPFKLMS NFMANRTIMK 420 LSENATRLHV IDFGISYGFQ WPCFIQHLSE RTGGPPKLRI TAIELPQPGF RPTERVEETA 480 RRLKKYAERF NVPFECNVIA QKWETIKFED LRIDRSELTV VNCMCRLKHI PDETVMASSP 540 RDIVLKLIKK INPDVFIHGV VNGTYNAPFF ATRFREALYH YSAFFDILEA TVPREDEMRR 600 LFEKAIYGRD IVNVVACEGL ERVERPETYK QWQVRNVRAG FKQLPLDQAL LKRVKRMLKS 660 YHDDFRIDED GNWMLQSWRG RTILALSVWV PA*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MDTLLERYDV SVERLNFGSV YPHQNLVNGF KVNHESTNSI FPPTNLDHNS SDSSTYSSTG  60
SDGDSIDPND FNHPMLKYIS DILLEEDLEG KPCMMQGCLA LQAAEKSFFD VLNPKGPPSP  120
NQPPLSHSLE NSDDDSTPSF HSGNGSSIAA KTDWGFDSSE TSHFQSSLVE SQSDNLLVSD  180
LLSELQSSGH FGGVGEASKF LPNGSFGTFD QERNHLMHPG PDLRPPGTRT LVRRPENYGY  240
NSTNILKGKK NHQREDVDYP EEGRSSKLPV AFADDSEPPQ EMFDEVLLCH GHHRLGNKQA  300
KGAKTTRSKK QNNNTEMVDL RTLLTQCAQA VANYDQRTAS ELLQKIRHHS SPCGDANQRL  360
AHYFADGLEA RLAGATTPTY SFLVGTQTST ADILKAYQVF ISSSPFKLMS NFMANRTIMK  420
LSENATRLHV IDFGISYGFQ WPCFIQHLSE RTGGPPKLRI TAIELPQPGF RPTERVEETA  480
RRLKKYAERF NVPFECNVIA QKWETIKFED LRIDRSELTV VNCMCRLKHI PDETVMASSP  540
RDIVLKLIKK INPDVFIHGV VNGTYNAPFF ATRFREALYH YSAFFDILEA TVPREDEMRR  600
LFEKAIYGRD IVNVVACEGL ERVERPETYK QWQVRNVRAG FKQLPLDQAL LKRVKRMLKS  660
YHDDFRIDED GNWMLQSWRG RTILALSVWV PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-46	302	691	1	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018507265.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_008359011.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]