PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018917.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 812aa MW: 91023 Da PI: 5.1969

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018917.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.4	6.5e-111	435	808	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs++d++ +++lL++++++asp+gd qRla++f+++L+ar+a++++++ k +s ++++ ++ l++++++ ++P +++ l Pbr018917.1 435 LRNLLILCAQAVSTNDFRTTSELLKQVRQHASPNGDGSQRLAHFFANGLEARMAGTGTGTQKFY-TSLVKRSSAVDMLKSYQVYISACPSKRMCMLFK 531 6899*************************************************999888755.5555557899******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++Il+ +e+++++Hi+Df+i +G+QWp L+q L++R++gpp+lRiTg++ p++g +e +eetg+rL +++e+++vpfe+n+++++++e+++le+L Pbr018917.1 532 NKMILKMAEKATTLHIVDFGILYGFQWPILIQHLSKRRGGPPKLRITGIEVPQPGfrPAEWIEETGRRLGRYCERFNVPFEYNAIASQDWESIQLEDL 629 ***************************************************999************************9999****** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+laVn++++ ++llde+v+++ +rd+vL+l+++++P+++v++ + ++n++ F++rf eal +ys+lfd+++ ++pr++eer E e+ gr Pbr018917.1 630 KTERNEVLAVNCMFRFKNLLDETVEVNCPRDAVLQLIRRMKPDIFVHSIINGSYNAPFFVTRFREALFHYSSLFDAFDINIPRDNEERLRFESEFYGR 727 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e++nv+aceg er+er et+++W+ r ++aG++p++l+++ +k k ++ + + + v+++ +++++gWk+r +++ S+W Pbr018917.1 728 EAMNVIACEGVERVERPETYKQWQVRCMRAGLQPLQLDQDLVKILKDKVKAWYHKDFVVDQDGDWMIQGWKGRIVYASSCW 808 *************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.256	409	789	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-108	435	808	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MDHPTFNGSP DYMNGFSIDD LAFSPNSTQF SNLTNEYQFN QFSPDLNFMD NHFSLPPDFE 60 QGNIVPKVSL TTSGESSVPS NSLSPPDGGS LSLPTAVSVG GVDSSSDDND FSEAVFKYVN 120 QILLEENIEK KPGMFFDPLG LRVTEKSFYD VLGQQYPFSP NQQPLHINPN VESPDGNNSG 180 SCGDCSGSNN SPSPGTSNSI DPQRVGDSGD QKSSFPETTL PNDNPFQFTS HSSSQLSVPL 240 ENRMTSVGDG QHVGGGQRLD DMLQGSSVEE FVAQNIYTDS DSILQFQRGL EEASKFLPKS 300 TQLLVDLEIN TVSPEVKASV PMVTVQKEKS ERKNSPNGSK GRKNREWEDV DLEEGRSSKQ 360 SAVYIEKTEE SELSEMFDKV LLSTGGNNEF QCDNVAFKNE ASKTLQPSGQ PQGSNGNGRK 420 ARGKKQGKKK ETVDLRNLLI LCAQAVSTND FRTTSELLKQ VRQHASPNGD GSQRLAHFFA 480 NGLEARMAGT GTGTQKFYTS LVKRSSAVDM LKSYQVYISA CPSKRMCMLF KNKMILKMAE 540 KATTLHIVDF GILYGFQWPI LIQHLSKRRG GPPKLRITGI EVPQPGFRPA EWIEETGRRL 600 GRYCERFNVP FEYNAIASQD WESIQLEDLK TERNEVLAVN CMFRFKNLLD ETVEVNCPRD 660 AVLQLIRRMK PDIFVHSIIN GSYNAPFFVT RFREALFHYS SLFDAFDINI PRDNEERLRF 720 ESEFYGREAM NVIACEGVER VERPETYKQW QVRCMRAGLQ PLQLDQDLVK ILKDKVKAWY 780 HKDFVVDQDG DWMIQGWKGR IVYASSCWVP V*

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MDHPTFNGSP DYMNGFSIDD LAFSPNSTQF SNLTNEYQFN QFSPDLNFMD NHFSLPPDFE  60
QGNIVPKVSL TTSGESSVPS NSLSPPDGGS LSLPTAVSVG GVDSSSDDND FSEAVFKYVN  120
QILLEENIEK KPGMFFDPLG LRVTEKSFYD VLGQQYPFSP NQQPLHINPN VESPDGNNSG  180
SCGDCSGSNN SPSPGTSNSI DPQRVGDSGD QKSSFPETTL PNDNPFQFTS HSSSQLSVPL  240
ENRMTSVGDG QHVGGGQRLD DMLQGSSVEE FVAQNIYTDS DSILQFQRGL EEASKFLPKS  300
TQLLVDLEIN TVSPEVKASV PMVTVQKEKS ERKNSPNGSK GRKNREWEDV DLEEGRSSKQ  360
SAVYIEKTEE SELSEMFDKV LLSTGGNNEF QCDNVAFKNE ASKTLQPSGQ PQGSNGNGRK  420
ARGKKQGKKK ETVDLRNLLI LCAQAVSTND FRTTSELLKQ VRQHASPNGD GSQRLAHFFA  480
NGLEARMAGT GTGTQKFYTS LVKRSSAVDM LKSYQVYISA CPSKRMCMLF KNKMILKMAE  540
KATTLHIVDF GILYGFQWPI LIQHLSKRRG GPPKLRITGI EVPQPGFRPA EWIEETGRRL  600
GRYCERFNVP FEYNAIASQD WESIQLEDLK TERNEVLAVN CMFRFKNLLD ETVEVNCPRD  660
AVLQLIRRMK PDIFVHSIIN GSYNAPFFVT RFREALFHYS SLFDAFDINI PRDNEERLRF  720
ESEFYGREAM NVIACEGVER VERPETYKQW QVRCMRAGLQ PLQLDQDLVK ILKDKVKAWY  780
HKDFVVDQDG DWMIQGWKGR IVYASSCWVP V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-43	439	808	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018917.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375903.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A498IRE0	0.0	A0A498IRE0_MALDO; Uncharacterized protein
STRING	XP_009375903.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]