PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr018829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22136.3 Da PI: 8.5063 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.3 | 2.4e-19 | 3 | 42 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ie++ rqv+fskRr ++KKA+EL+++C+++v+++ifs Pbr018829.1 3 LIESQHARQVSFSKRRSSLFKKASELCTMCAVQVLLVIFS 42 59*************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.22E-21 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.815 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-13 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-19 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-5 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-5 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MELIESQHAR QVSFSKRRSS LFKKASELCT MCAVQVLLVI FSLGRKPFSF GYPSVHSVLN 60 RFHQFQNPDA STSQSEATKE PVMQGLNDSF SHLLEQVKFE QKRGKQLNRK IMEHSGPDWL 120 KAPMDSLNLE ELRKVKETLV DVKKKIKKQR DELLAEPLAS SANNSIELAH CPETNLVGDI 180 SSVHPQGSLT FREEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr018829.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009375893.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A314YUF0 | 3e-53 | A0A314YUF0_PRUYE; Agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009375893.1 | 1e-142 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20409 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-20 | AGAMOUS-like 29 |