PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018801.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 668aa    MW: 73113.7 Da    PI: 7.7729
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018801.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.88.9e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRrng+lKKA+ELSvLCdaev +iifss+gklye++s
  Pbr018801.2  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLYEFAS 59
                 79***********************************************86 PP
2K-box101.98.6e-349117714100
        K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + s++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K++l++eq+e+l+kke+ l + nk+Lr klee
  Pbr018801.2  91 SLSWYQEVTKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQTRQRKTQLMIEQMEDLRKKERHLGDLNKQLRVKLEE 177
                  468********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.613161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.12E-38262No hitNo description
SuperFamilySSF554551.29E-28262IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129717.00391181IPR002487Transcription factor, K-box
PfamPF014861.3E-2992175IPR002487Transcription factor, K-box
Gene3DG3DSA:3.40.1190.206.0E-99343665IPR029056Ribokinase-like
PfamPF002942.1E-78346654IPR011611Carbohydrate kinase PfkB
CDDcd011678.39E-122347649No hitNo description
SuperFamilySSF536131.56E-85348662IPR029056Ribokinase-like
PRINTSPR009905.2E-5373392IPR002139Ribokinase/fructokinase
PROSITE patternPS005830378402IPR002173Carbohydrate/puine kinase, PfkB, conserved site
PRINTSPR009905.2E-5528543IPR002139Ribokinase/fructokinase
PRINTSPR009905.2E-5570581IPR002139Ribokinase/fructokinase
PROSITE patternPS005840599612IPR002173Carbohydrate/puine kinase, PfkB, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006014Biological ProcessD-ribose metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004747Molecular Functionribokinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVGLIIFSS RGKLYEFASA  60
GFSASLYVRG IITQLPQSQI DTFHPPSLSS SLSWYQEVTK LKAKYESLQR TQRHLLGEDL  120
GPLSVKELQN LEKQLEGALA QTRQRKTQLM IEQMEDLRKK ERHLGDLNKQ LRVKLEEEGQ  180
NLNVIQNMWS SDAAAGSSNF SLHSSQTNPM DCTPEPVMQM GYHQYHPAEG SSIPKSLTSE  240
TNFIQGWLSG GYLFELPVGF VADSIGATLG GGAAFLLGRT ATVDDQIQVI EMIKLLETKG  300
CSCFPVTLER SKKGSFKFVR NSSSLSGSSK LLSLKKKSSI QEKNSELIVC FGEMLIDFVP  360
TSAGVSLADA DGFKKAAGGA PANVAVGISR LGGSAAFMGK VGKDEFGYML ADILKENNVD  420
NSGMRFDPHA RTALAFVTLR SDGEREFMFY RNPSADMLLQ EKELDVNLIK KAGIFHYGSI  480
SLIEEPGRSA HLAAMDIAKK AGCILSYDPN LRLPLWPSAE AAQKGIMSIW NQADIIKISE  540
EEIEFLTGGD DPYDDEVVFK KLYHPNLKLL LVTEGPAGCR YYTKEFKGKV AGIKTDAVDT  600
TGAGDSFVAA ILNGLGSDIN LYKDEQKLRE ALLFANGCGA LTVQKKGAIP ALPTKEAVNQ  660
LLQQTTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ey7_A1e-5635266325323Fructokinase
5ey7_B1e-5635266325323Fructokinase
5eyn_A1e-5635266325323Fructokinase
5f0z_A1e-5635266325323Fructokinase
5f11_A1e-5635266325323Fructokinase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018801.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231600.0AB623160.2 Pyrus pyrifolia var. culta PpMADS4-1 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375843.10.0PREDICTED: probable fructokinase-7
TrEMBLA0A498KNS10.0A0A498KNS1_MALDO; Uncharacterized protein
STRINGXP_009375843.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-97AGAMOUS-like 6