PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018647.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 643aa    MW: 70295.9 Da    PI: 6.8996
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018647.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.38e-1052726422374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  ++ L+e+A+a+s+g+ e+a ++L+r++ +  a+p+ ++ qRl  ++  AL++r++     + +  p  e      +e++ +++ ++e+sP++++++++
  Pbr018647.1 272 KQSLMEAATAISDGKSEAAMEILTRMNSTqvANPRPSSEQRLLEFMGLALKSRVNP----IDNPAPIAELF---RQEHTGSTQSLYELSPCFRLGFMA 362
                  578***********************9988799999*******************9....66655665555...8999999***************** PP

         GRAS  98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  aN aI+ea+ ++    ++vH+iDfdi+qG+Q++ L++aL +R++  p  ++iT+v++  +g +e+l+ ++++L++ A++lgv++efnv v++++ dl+
  Pbr018647.1 363 ANLAIVEATMTDqsatSKVHVIDFDIGQGGQYVLLFHALVARQNVRPaVVKITTVAD--NGGEERLRMVHQKLSQDAQRLGVRLEFNV-VSQKIGDLN 457
                  ********9988778899************************9655549********..77**************************9.7******** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+ er+kvE++
  Pbr018647.1 458 RESLGCEPDEPIAVNFAFKLYSMPDESVSMDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMARVNECCAYYGALLESIEATVPRENPERVKVEEA 555
                  ************************************************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p++ +  ++ k  l   +  +  ++v+ee+g +++gW +r+L+++SaWr
  Pbr018647.1 556 -LSRKVANSVACEGRDRVERCEVFGKWRARMGMAGFELRPMGPNLIESLKNRLGSGNrvNSAFTVKEENGGVCFGWISRTLTVASAWR 642
                  .************************************************9999877765566*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.548245620IPR005202Transcription factor GRAS
PfamPF035142.8E-102272642IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MQSGGYNGGR GSGVPDFYPN GRSISIAAAM NGHNPSQNNP FHRSQLPGLF LDPTASHIAR  60
QTQFQPQTQN PAAGLIGKRT LAEFQAQQQN HYNPHQNPSQ NLYLRSLKAR SFQHSSPISP  120
LSPIDFSSGS SLSGSESSFS STSILPHQRF GLPMLQQLRP QPINQPAPQA MSYVNNLVPN  180
NPVQTRGVDS EKMFSNRLQE LEKQLLDDND EDDEGDAVSV ITKTNSEWSE TIQNLMGTAA  240
PSQNQKPVSP SPTSSSSSSS SVASPATSTC SKQSLMEAAT AISDGKSEAA MEILTRMNST  300
QVANPRPSSE QRLLEFMGLA LKSRVNPIDN PAPIAELFRQ EHTGSTQSLY ELSPCFRLGF  360
MAANLAIVEA TMTDQSATSK VHVIDFDIGQ GGQYVLLFHA LVARQNVRPA VVKITTVADN  420
GGEERLRMVH QKLSQDAQRL GVRLEFNVVS QKIGDLNRES LGCEPDEPIA VNFAFKLYSM  480
PDESVSMDNP RDELLRRVKG LAPRVVTLVE QELNTNTAPF MARVNECCAY YGALLESIEA  540
TVPRENPERV KVEEALSRKV ANSVACEGRD RVERCEVFGK WRARMGMAGF ELRPMGPNLI  600
ESLKNRLGSG NRVNSAFTVK EENGGVCFGW ISRTLTVASA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-392736426375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375504.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-178SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A498KTS40.0A0A498KTS4_MALDO; Uncharacterized protein
STRINGXP_009375504.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-165SCARECROW-like 8